DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and Hel89B

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001287351.1 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster


Alignment Length:590 Identity:192/590 - (32%)
Similarity:298/590 - (50%) Gaps:86/590 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   724 GNDEDAK-DLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVE--QASIMVNGTLKEYQIKGLEWLV 785
            |..|..| |.:...|..|.|:         :.:..:.|.:.  :..:.::..|:.||..|:.||.
  Fly  1307 GKTEQLKSDPLQARKTRDREF---------LDYLFNPKSIPNYKVPVPISVELRCYQQAGINWLW 1362

  Fly   786 SLYNNNLNGILADEMGLGKTIQTISLVT----YLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAP 846
            .|...||:|||.|:||||||:|||.::.    :.........|.|:|.|.:...:||.|.||:..
  Fly  1363 FLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLD 1427

  Fly   847 AVGV---VSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNH 908
            ...|   :.|.|.|.||..|::.: .||.|:::.:|:.|.||....:.|.:.|.::||||.:||.
  Fly  1428 QGSVLRPLHYYGFPVGREKLRSDI-GTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNG 1491

  Fly   909 HCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGE-K 972
            ..|.::.:. ...|.:||:|:|||:||.:.|||:|.:||:|....:...|.|.|:.|..::.: |
  Fly  1492 KTKSSKAIK-RLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAK 1555

  Fly   973 VELNEEET-ILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLY-----KHMQ 1031
            ....|:|. :|.:..||:.:.||||||:|::|...||.|:...:.|::|.||..||     ||::
  Fly  1556 SSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLK 1620

  Fly  1032 ---------SKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGV 1087
                     |...::|:......|       :...:..|:.:||||.:.....|           
  Fly  1621 DCLDKLGDSSSASMVTENLSAKTH-------IFQALRYLQNVCNHPKLVLRQSE----------- 1667

  Fly  1088 VSGPDLYRVSGKFEL----LDRI-----LPKLK--------------ATNHRVLLFCQMTQCMTI 1129
                :|.:|:.:..|    ||.|     ||.||              .:.||.|:|||:...:.|
  Fly  1668 ----ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDI 1728

  Fly  1130 IEDYLGWRQF---GYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVI 1191
            :|..|..|..   .||||||:..|..|.:::..||:..| :.|.||:|..|||||||..||||:.
  Fly  1729 VEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPS-IDVLLLTTMVGGLGLNLTGADTVIF 1792

  Fly  1192 FDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKS 1256
            .:.||||.:||||.||||||||:..|.|.||:|.||:||:|:...::|:.....|:.|.....::
  Fly  1793 VEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQT 1857

  Fly  1257 TGSER 1261
            .|:.:
  Fly  1858 MGTSQ 1862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727
BRK 649..693 CDD:197800
PHA02934 687..>824 CDD:165245 30/106 (28%)
SNF2_N 776..1071 CDD:278600 106/317 (33%)
DEXDc 793..932 CDD:238005 50/145 (34%)
Helicase_C 1097..1212 CDD:278689 57/140 (41%)
SnAC 1304..1375 CDD:291293
Bromo_SNF2L2 1425..1530 CDD:99947
Hel89BNP_001287351.1 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:288874
HEAT repeat 1234..1261 CDD:293787
HEAT repeat 1269..1298 CDD:293787
SNF2_N 1353..1662 CDD:278600 106/317 (33%)
DEXDc 1370..1514 CDD:238005 50/145 (34%)
Helicase_C 1689..1813 CDD:278689 53/124 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467185
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10799
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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