DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and CG7376

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001261471.1 Gene:CG7376 / 38715 FlyBaseID:FBgn0035689 Length:1270 Species:Drosophila melanogaster


Alignment Length:980 Identity:198/980 - (20%)
Similarity:321/980 - (32%) Gaps:343/980 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 MQELQRLPATMS---EDLRLQAAIELRALRVLNFQRQLRMEFV----QCTRRDT--TLETA--LN 476
            :.|.|.:.::.|   |.:|:..||...|:.....:....:|||    .|...|.  |::.|  ||
  Fly   432 LDEAQMVESSTSAAAEMVRMLPAINRWAVTGTIDELPPLLEFVGRPEVCRPPDAWQTVDKAFQLN 496

  Fly   477 IK-----------LYKRTKRQGLREARATEKLEKQQKLEAERKR----RQKHL----EFLAAVLQ 522
            .|           |::..|.:...|.....:.|...:||.....    |::||    :|||||.:
  Fly   497 YKCEPLLELLEHSLWRTCKSKVEHELGIPPQTEVVHRLELSNVESLYYREEHLKCHEQFLAAVAK 561

  Fly   523 HGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKK 587
            |.:    .:.:|.:.||.::..::               ||..:...|            |.|..
  Fly   562 HTR----HNADNSSCLASISPQLL---------------RIILKPFLR------------IRQTC 595

  Fly   588 DKRLAF--LLSQTDEYI--SNLTQMVKQHKDDQMKKK------EEEGKRLIQFKKE--------- 633
            ...:.|  .:|.|| |:  .:|...:|.:.:::.|.:      ...|...|.|.|.         
  Fly   596 SVPVVFNSNVSSTD-YLHPQDLLARLKSNNENECKTELRTWASSYNGLAAIYFIKNDFPQAIKYY 659

  Fly   634 ---LLMSGEYIGIDEGSIVAD--MRVHVVEQC--------TGKKLTGDDAPMLKHLHRWLNM-HP 684
               |.::.||   :|.:|..|  :::|.:...        ...|||     .|:|......| ..
  Fly   660 NLLLKLANEY---NEQNISVDSVLQIHAIYNLLQASSLAPAEHKLT-----ELEHKKYQAQMSRL 716

  Fly   685 GWDWIDDE----EDSCGSNDDHKPKVEEQPTATEDATDKAQAT--GNDEDAKDLITKAKVEDDEY 743
            .|.:::|.    |.:..|.:::..||.|.....|.:|....||  .:.....|.|.. ||.||.:
  Fly   717 EWKYLEDNTRVLESALSSYNENLEKVSELEKRFEGSTLDLLATMVNHKTSLHDAIWN-KVRDDFF 780

  Fly   744 RTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQT 808
            |          ..|..:.:|..:.|.          |:.:.:.:::|.|..:             
  Fly   781 R----------QNISVERLENVNSMA----------GMLYFMDIWHNKLQNL------------- 812

  Fly   809 ISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFN 873
                                  .|||   :.|||         ..||      ::|....|.|..
  Fly   813 ----------------------KSTL---IAEFE---------FLKG------VMQQACEAIKTG 837

  Fly   874 VLLTT-----YEYVI-----------KDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIA 922
            |||:.     .|.|.           |||.|..|              |:.:|:|..:.::  :.
  Fly   838 VLLSMEIINFIENVTVCHLTDILDANKDKPVKPK--------------KHRYCRLCLIRDS--LN 886

  Fly   923 PYRLLLTGTPLQNKLPELWALLN-----FLLPSIF---KSCSTFEQWFNAPFATTGEKVELNEEE 979
            .:..||....|..|......|.|     ..:.|||   :|...|.:|          |.|...:.
  Fly   887 QFECLLFAKKLDEKATVTEGLENPSMEISFIKSIFAFLRSKQDFSEW----------KEECQSKL 941

  Fly   980 TILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIK-------CDMSALQRVLYKHMQSKGVLL 1037
            .:|      ..|:..:..::|..:|      |||::|       |.|.              :||
  Fly   942 ELL------SCLQDLVKFQIKYWIE------VEYMVKAFDELEMCKMR--------------ILL 980

  Fly  1038 TDGSEKGKHGK-----------GGAKALMNTIVQLRKLCNHPFMFQHIEE--------------- 1076
            ||..|:..:.:           .....|..:.:...:||......:|::|               
  Fly   981 TDDPEEQSNYRILACQLDEQLQFNQYNLQTSQLNFTRLCGRLKYLKHLKEDSADKPCPICQTQDD 1045

  Fly  1077 -KY---------CDH--------TGGHGVV-------SGPDLY-------------RVSGKFELL 1103
             :|         |.|        .|..||.       ..|.||             ..|.|...:
  Fly  1046 VRYVMMVCGHFVCQHCLDSMRRKNGRAGVTKCPLCRQDSPQLYYSVRPGAHKSIIGDFSTKISSV 1110

  Fly  1104 DRILPKLKATN--HRVLLFCQMTQCMTIIEDYLGWR--QFGYLRLDGTTKAEDRGELLRKFNAKG 1164
            ..::.|:|..|  .::::|.|....:..|...|...  ||   |...|.|..|      .|....
  Fly  1111 VELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQF---RNKCTNKDFD------DFKNPL 1166

  Fly  1165 SDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVE 1229
            |:|...|:....|..||||..|..|.:.:...||..:.||..|.||.||:...:|.|.:...::|
  Fly  1167 SNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNETIE 1231

  Fly  1230 ERILA 1234
            |.||:
  Fly  1232 ENILS 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727 17/79 (22%)
BRK 649..693 CDD:197800 10/58 (17%)
PHA02934 687..>824 CDD:165245 23/142 (16%)
SNF2_N 776..1071 CDD:278600 59/336 (18%)
DEXDc 793..932 CDD:238005 26/154 (17%)
Helicase_C 1097..1212 CDD:278689 33/118 (28%)
SnAC 1304..1375 CDD:291293
Bromo_SNF2L2 1425..1530 CDD:99947
CG7376NP_001261471.1 SNF2_N 221..601 CDD:278600 41/199 (21%)
PHD_SF 281..320 CDD:304600
TPR 636..669 CDD:197478 5/32 (16%)
RING 1037..1083 CDD:238093 6/45 (13%)
HepA <1096..1238 CDD:223627 41/150 (27%)
Helicase_C 1108..1214 CDD:278689 31/114 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467188
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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