DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and CG4049

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_611885.3 Gene:CG4049 / 37860 FlyBaseID:FBgn0034976 Length:1669 Species:Drosophila melanogaster


Alignment Length:1769 Identity:366/1769 - (20%)
Similarity:560/1769 - (31%) Gaps:652/1769 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 PPGSQHAGQPPVPPQQQQQPP----------PSAGTPP-------QCSTPPASNPYGPPVPGQKM 276
            |..:.....|.....|:.|.|          ||...|.       ..||.|...|...|....:.
  Fly     4 PEANMEESNPNYDVNQRLQKPEGWPHVNEFHPSMMYPDDPRRYFHNASTDPQHQPQQHPQQQPEQ 68

  Fly   277 QVAPPPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQPPPP-EPHQHQLPNGGKPLSMGP 340
            .....|.|....|..|.|.|         ||||.|..|||:|.||. :|.||             
  Fly    69 HPEQHPQHPLHSQQQPQQHP---------QQQPQQHPQQQTQQPPQLQPQQH------------- 111

  Fly   341 SGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPMPKPNRITTVAKPVGLDPI 405
                                               ||.|:.|   |:|.|               
  Fly   112 -----------------------------------PQAQIQP---PIPVP--------------- 123

  Fly   406 TLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRVLNFQRQLRMEFVQCTRRDTT 470
                         ||..|:....:|..|.|... :.:..:...||:|                ..
  Fly   124 -------------ISTPMEGTMEVPVKMPEYCP-ETSQPVEPDRVIN----------------PL 158

  Fly   471 LETALNIKLYKRTKRQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNK 535
            .|.|.|...|...::....|.:|.   .|:..:.|..:::..||.         |::|:....|.
  Fly   159 AEVAKNTVPYGHKRKNSAGEDQAA---NKKLSMAAAEEKKNSHLR---------KNIRDVMNENN 211

  Fly   536 AQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDE 600
            .....:         .|:||        |.||:.| :|..::..|::..|...|:: |.:.|.||
  Fly   212 LDTTTL---------AAQRE--------ESERLAR-VAGQQKSMREIQKQVVHKQI-FRILQLDE 257

  Fly   601 -------YISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVE 658
                   .::|   .|:.|..             :.|.:|.:.|..:                 :
  Fly   258 SEGIESCAVAN---PVEHHPP-------------VDFPEEEIASDTF-----------------D 289

  Fly   659 QCTGKKLTG---DDAPMLKHLHRWLNMHPG-WDWIDDEEDSCGSNDDHKPKVEEQPTATEDATDK 719
            ......|:|   :|.     ||:..::.|. ...|||..|    :|......||:....||..:.
  Fly   290 DSNSSSLSGGSIEDV-----LHKGASVQPSEVVTIDDSSD----DDCILLSEEEEEEDDEDLNES 345

  Fly   720 AQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWL 784
            ..||.:....||:.   .|.|:    ..|...::||...|:.:..|. .:...:|.:||.|:.: 
  Fly   346 DDATNSGMHVKDIY---NVPDE----NGQVVVNMAHPEGEETLYLAP-QIAKVIKPHQIGGVRF- 401

  Fly   785 VSLYNNNLNG------------ILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNW 837
              ||:|.:..            |||..||||||:|.:|.....: |.......|.::|::||.||
  Fly   402 --LYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFCDIFL-RHTSAKTVLCVMPINTLQNW 463

  Fly   838 VLEFEKWAP---------------------------------------AVGVVSY---------- 853
            :.||..|.|                                       .|.::.|          
  Fly   464 LSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTARAKVILNWVHDGGVLLIGYELFRLLALKL 528

  Fly   854 ------KGS---PQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHH 909
                  |||   |.|        ..:..:::...||.::|....|       :|.|||||:||.|
  Fly   529 VKTRKRKGSVIRPDG--------MDSSSDLMNLVYEALVKPGPDL-------VICDEGHRIKNSH 578

  Fly   910 CKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVE 974
            ..::..|. ......|::|||.||||.|.|.|.:::|:.|:...:.:.|...|..|. ..|:.|:
  Fly   579 AGISLALK-EIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRTEFCNMFERPI-QNGQCVD 641

  Fly   975 LNEEETILIIRR---LHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQR------------ 1024
            ...::..|:..|   ||.:|..|:.||....::..||.|.||:|...|:|.||            
  Fly   642 STPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRKLYDTFMTDVVR 706

  Fly  1025 ----------------------VLYKHMQ--------------SKG-------------VLLTDG 1040
                                  |||..::              :||             :.|...
  Fly   707 TKAFPNPLKAFAVCCKIWNHPDVLYNFLKKCETDLDLEIDEEVTKGAATPIVEPSADSSLSLASP 771

  Fly  1041 SEKGKHGKGG--------AKALMNTIV-------------------------------------- 1059
            .||..:|.|.        :||...|:.                                      
  Fly   772 LEKKINGSGDPINSIETFSKAENQTLFNIPASSDLNAKYLNKSPSFYDEKPEPLNYGSFGSEGKN 836

  Fly  1060 ------------------------------------------------------------QLRKL 1064
                                                                        ||...
  Fly   837 NYWMDSSILPKPGCVEVIKQTDTNMSSNFESITGSSEIVDLDTNEIKTVETTIQAPCSNNQLDNG 901

  Fly  1065 CN---------------------HPF-----MFQHIEEKYCDHTGG--HGVVSGPDLYRVSGKFE 1101
            ||                     .||     ..|..||..|.....  ...|||  |...|.|.|
  Fly   902 CNAGKPSEWNAAGSKNSSGVAAAEPFKKLLKSKQRNEEFSCSWAVDLMKNYVSG--LISNSPKME 964

  Fly  1102 LLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLG----------W-RQFGYLRLDGTTKAEDRGE 1155
            :...||.:......|:|||.|....:.::|.||.          | :...|.||||:|.:::|..
  Fly   965 IFFCILKESLNLGDRILLFSQSLLTLNLLEVYLKSSYVPGSNQLWTKNSSYFRLDGSTSSQERER 1029

  Fly  1156 LLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVL 1220
            |:.:||| .|:|.:||:|||||.||:||..|:.|:|||:.|||..|.||..|.:|.||.....|.
  Fly  1030 LVNEFNA-NSNVKLFLISTRAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYRYGQTKPCFVY 1093

  Fly  1221 RLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQ----TILHQD-DNEEEEEN 1280
            |::....:|::|         .|.::.:.||.|:.......:..|.    |.|.|| |::|:...
  Fly  1094 RIVMDRCLEKKI---------YDRQIKKQGMSDRIVDECNPEAHLSMKDITNLCQDYDSDEDTVE 1149

  Fly  1281 EV------------PDDE-----MINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESE 1328
            ||            |.:|     ..||....|.      |..:...|..|::..|....  ..|.
  Fly  1150 EVNKSTGDLSKPGSPSEEGSKPGSANMSPNASN------KSNNGPTKPLDDQNTPKSPN--GASH 1206

  Fly  1329 LPDWLTKDDDEVERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDS 1393
            .|....|:|.:....|.....:|||          |.......||         .|..|....|.
  Fly  1207 SPIKTEKNDGQEHAVHVDGIINTIL----------DMHRHCVTKE---------PFMHESLLVDQ 1252

  Fly  1394 KRKRRKRKNRKEESDDDSLILKRRRRQNLDKRSKKQMHKIMSAVIKHNQDGRTLSEPFMK----- 1453
            |.::..:..:::......|..|....|.......|..:||:      |.||..:::|..:     
  Fly  1253 KDRKLSQAEKRQAHRSYELEKKAAVNQRFTYAPAKMNYKIV------NNDGTVITKPMNQQIKTN 1311

  Fly  1454 ------------LPSR--QRLPDYYEIIKRPVDIKKILQRIEDCKYADLNELEKDFMQLCQNAQI 1504
                        :|:.  ||.....:.:..|:|:           ....|..:|           
  Fly  1312 TSSSTGGRSTRWIPADVWQRQGMTAQEMTLPLDV-----------VIPTNSADK----------- 1354

  Fly  1505 YNEEASLIYLDSIALQKVFV-GARQRITAAADAAAVAAGDNTGEAHGNGGSDNSDNDD-----DD 1563
                |::|..   |.|:|.| .:.:.|....|:..:.|...|.:..    .:.::.||     ||
  Fly  1355 ----ANIILK---AGQRVMVLKSAKGIYMQLDSGKIIAIRTTAKTE----PEKTNKDDVIDITDD 1408

  Fly  1564 GGDD----GSDDEEIATTSA----AAVKMKLKLNKSLASAPATPT---QSSSNVSSGAATTSKKQ 1617
            |..|    .|.:|::...:|    ..||.| :.|.:..|.|..|.   :|:.||....:.|....
  Fly  1409 GDTDTTKPQSPEEDVKDLTADDEPRVVKNK-ESNPATTSRPEMPAKDRKSTENVQHFKSQTQPNT 1472

  Fly  1618 TRRKRSQKKYTISD 1631
            |....:.:....||
  Fly  1473 TLATTTNQHQLPSD 1486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903 33/146 (23%)
HSA 501..573 CDD:214727 13/71 (18%)
BRK 649..693 CDD:197800 9/47 (19%)
PHA02934 687..>824 CDD:165245 39/148 (26%)
SNF2_N 776..1071 CDD:278600 104/560 (19%)
DEXDc 793..932 CDD:238005 47/208 (23%)
Helicase_C 1097..1212 CDD:278689 51/125 (41%)
SnAC 1304..1375 CDD:291293 14/70 (20%)
Bromo_SNF2L2 1425..1530 CDD:99947 20/124 (16%)
CG4049NP_611885.3 SNF2_N 394..730 CDD:278600 85/356 (24%)
DEXDc 420..598 CDD:238005 45/194 (23%)
HELICc 958..1093 CDD:238034 53/135 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467183
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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