DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Iswi

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster


Alignment Length:1214 Identity:349/1214 - (28%)
Similarity:520/1214 - (42%) Gaps:381/1214 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   574 EDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSG 638
            |.|..:...|:..:.:|..|||.||:.:...:|...|.....:.:.|:.:.|             
  Fly    30 EKEAEFDNKIEADRSRRFDFLLKQTEIFTHFMTNSAKSPTKPKGRPKKIKDK------------- 81

  Fly   639 EYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSCGSNDDHK 703
                 |:...|||                       |.||                         
  Fly    82 -----DKEKDVAD-----------------------HRHR------------------------- 93

  Fly   704 PKVEEQPTATEDATDKAQATGNDED--AKDLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVEQAS 766
             |.|::               .||:  |:|..||     :.:|.:....|               
  Fly    94 -KTEQE---------------EDEELLAEDSATK-----EIFRFDASPAY--------------- 122

  Fly   767 IMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPL 831
             :.:|.:::|||:||.|::|||.|.:|||||||||||||:|||||:.||...|...||:::|||.
  Fly   123 -IKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPK 186

  Fly   832 STLPNWVLEFEKWAPAVGVVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWK 895
            |||.|||.||:||.|::..|...|....|. .:::.:...:::|.:|:||..|::|:|..|..|:
  Fly   187 STLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWR 251

  Fly   896 YMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQ 960
            |::|||.||:||...||:::|. .:....|||:|||||||.|.|||||||||||.:|.|...|::
  Fly   252 YLVIDEAHRIKNEKSKLSEILR-EFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDE 315

  Fly   961 WFNAPFATTGEKVELNEEETIL----IIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSA 1021
            |||.              .|.|    :|.|||.||:||||||||.|||.:|..|.|..|...:|.
  Fly   316 WFNT--------------NTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSK 366

  Fly  1022 LQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHG 1086
            :||..|..:..|.:.:.:|:     ||.....|.|.::||||..|||::|.             |
  Fly   367 MQRDWYTKVLLKDIDVVNGA-----GKVEKMRLQNILMQLRKCTNHPYLFD-------------G 413

  Fly  1087 VVSGP----DLYRV--SGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1145
            ...||    |.:.|  |||..:||::||||:....|||:|.|||:.:.|:|||..||.:.|.|||
  Fly   414 AEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLD 478

  Fly  1146 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHR 1210
            |.|..|||...:::||...|..|:|:|||||||||:||.|||.|:|:||||||..||||.|||||
  Fly   479 GQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHR 543

  Fly  1211 IGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAG-MFDQKSTGSERQQFLQTILHQDDN 1274
            |||:.:|||.||:|.::|||:|:..|..||.:|:.|||.| :.|.:|....:.:.| .|:....|
  Fly   544 IGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEML-NIIRFGAN 607

  Fly  1275 E--EEEENEVPDDEMINMMIARSEEEIEIFK----------------------------RMDAER 1309
            :  ..:|.::.|:: |::::.|.|.:....|                            :.:.|.
  Fly   608 QVFSSKETDITDED-IDVILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVYQFEGED 671

  Fly  1310 KKEDEEIH--------PGRER--------------LIDESELP-------DWLTKD--------- 1336
            .:|.::::        |.|||              .:.|.:.|       ..:.:|         
  Fly   672 WREKQKLNALGNWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLF 736

  Fly  1337 ---DDEVERFH----YQYDEDTILGRGS-----RQRKEVDYTDSLTEKE--------------WL 1375
               |.|:..|.    |:..::|.||..:     .:::::|..:.|||:|              |.
  Fly   737 ELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQGFTAWT 801

  Fly  1376 KAIDDGAEFDEEEEEDDSKRKRRKRKNRKEESDDDSLILKRRRRQNLDKRSKKQMHKIMSAVIKH 1440
            |.  |..:|              .:.|.|...||            :|..:|....|....||::
  Fly   802 KR--DFNQF--------------IKANEKYGRDD------------IDNIAKDVEGKTPEEVIEY 838

  Fly  1441 NQDGRTLSEPFMKLPSRQRLPDYYE----IIKRPVDIKKILQ-------------RIE--DCKYA 1486
            |   ....|...:|...:|:....|    .|:|.:.|||.|.             |::  :.|..
  Fly   839 N---AVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGK 900

  Fly  1487 DLNELEKDFMQLC-------QNAQIYNE-----EAS--------------------------LIY 1513
            :..|:|..|: :|       ....:|.|     .||                          ||.
  Fly   901 NYTEIEDRFL-VCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 964

  Fly  1514 LDSIALQKVFVGARQRITAAADAAAVAAGDNTGEAHGNGGSDNSDNDDDDGGDDGSDDEEIATTS 1578
            .::|.|::   ..|......|...:|:||  :|.|..|                           
  Fly   965 RENIELEE---KERAEKKKKAPKGSVSAG--SGSASSN--------------------------- 997

  Fly  1579 AAAVKMKLKLNKSLASAPATPTQSSSNVSSGAATTSKKQTRRKR 1622
                          ..|||...::|....|....||....::|:
  Fly   998 --------------TPAPAPQPKASQKRKSEVVATSSNSKKKKK 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727
BRK 649..693 CDD:197800 6/43 (14%)
PHA02934 687..>824 CDD:165245 42/138 (30%)
SNF2_N 776..1071 CDD:278600 138/299 (46%)
DEXDc 793..932 CDD:238005 65/139 (47%)
Helicase_C 1097..1212 CDD:278689 67/114 (59%)
SnAC 1304..1375 CDD:291293 21/134 (16%)
Bromo_SNF2L2 1425..1530 CDD:99947 30/161 (19%)
IswiNP_523719.1 DBINO <30..67 CDD:290603 10/36 (28%)
SNF2_N 131..411 CDD:278600 138/299 (46%)
DEXDc 148..287 CDD:238005 65/139 (47%)
HELICc 422..553 CDD:238034 74/130 (57%)
HAND 697..796 CDD:286232 15/98 (15%)
SANT 797..838 CDD:197842 13/68 (19%)
SANT 799..838 CDD:238096 13/66 (20%)
SLIDE 853..965 CDD:286233 20/112 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467156
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10799
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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