DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Etl1

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster


Alignment Length:880 Identity:268/880 - (30%)
Similarity:418/880 - (47%) Gaps:196/880 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   526 DLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAE-DEEGYRKLIDQKKDK 589
            |||:|         |:||...:..|:..|     .||:..::..::||: |.:|           
  Fly    24 DLRQF---------RINKNASSVVASPSR-----TERVPGKKRIQVMADSDSDG----------- 63

  Fly   590 RLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQFKK-----ELLMSGEYIGIDEGSIV 649
                          |.:|..|:.|.:...|::||  |.:...|     :.:...|.:......:.
  Fly    64 --------------NDSQTPKKTKLELTVKEKEE--RYMAAAKISPHFDTMAIQESLSRTNWDVA 112

  Fly   650 ADMRVHVVEQCTGKKLTGDDAPMLK-HLHRWLNMHPGWDWIDDEEDSCGSNDDHKPKVEEQPTAT 713
            |.:| ::.|.|..|   |.:.|:.| .|....|...|.::.|::.    |:||...:.::|...:
  Fly   113 ASVR-YLRENCKPK---GHNGPLAKSKLKPRSNGISGGNFSDNDH----SDDDDVKQSKDQVYDS 169

  Fly   714 EDATDK--AQATGNDE-----------------------------------DAKDLITKAKVED- 740
            :|:..:  .:.||..:                                   |..||  :.|:|. 
  Fly   170 DDSDSEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDL--RQKLESI 232

  Fly   741 ----------DEYRTEEQTYYSIAHTIH------EK-------VVEQASIMVNG-TLKEYQIKGL 781
                      .|...::.|..:|....:      ||       :|||..::.:| .|.:|||.||
  Fly   233 RMSGDLLNYAQELINKQNTVAAILSKCNNMVSRLEKAISNGAGIVEQPKLLSSGLQLADYQIIGL 297

  Fly   782 EWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAP 846
            .||..::...:|||||||||||||||.|:.:.||.:.......:||:||.|||.||..|..:|.|
  Fly   298 NWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCP 362

  Fly   847 AVGVVSYKGSPQGRRLLQNQMRA---TKFNVLLTTYEYV---IKDKAVLAKIQWKYMIIDEGHRM 905
            .:.|..|.||...||.::.:...   |.|:||||||..|   .:::.:....:..|:|.||.|.:
  Fly   363 ELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIFDEAHML 427

  Fly   906 KNHHCKLTQVLNTHYI---APYRLLLTGTPLQNKLPELWALLNFLLPSIF-KSCSTFEQWFNAPF 966
            ||    :|.....:.|   |..|:|||||||||.|.||.:||.|::|..| ||....:..|....
  Fly   428 KN----MTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKG 488

  Fly   967 ATTGEKVELNE-EETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHM 1030
            .:.|::.|::: :||  .|:|..::::||:||||||:|...||.|:..:.|..||:.|::.|.. 
  Fly   489 KSDGDQDEVSQFQET--QIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHE- 550

  Fly  1031 QSKGVLLTD--GSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQH-------------------- 1073
                  |.|  .:.||:......:|.:..::::|::.|||.:.:|                    
  Fly   551 ------LVDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSF 609

  Fly  1074 --IEEKYCDHTGGHGVVSGPDLYRV------------------SGKFELLDRILPKLKATNHRVL 1118
              ..|:|....  ..|:|...:|::                  ||||..||.:||||||..||||
  Fly   610 KKTNEQYIFEE--LAVMSDFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVL 672

  Fly  1119 LFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNL 1183
            ||.|.|..:.|:|:||..|:||:.||||.|....|.:|:..||...| :|||||||:|||:|:||
  Fly   673 LFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINL 736

  Fly  1184 QTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1248
            ..|||.||.|.|:||:.|.||:||.||:||:..|.:.||::.:::||.||.||..||.:::.:..
  Fly   737 TAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITS 801

  Fly  1249 AGMFDQKSTGSERQ---QFLQTILHQDDNEEEEEN 1280
                ::|....|::   :.|.|.|..|.::||:.|
  Fly   802 ----NEKGEVHEQRCVVKLLTTALGLDKDQEEQLN 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727 11/46 (24%)
BRK 649..693 CDD:197800 12/44 (27%)
PHA02934 687..>824 CDD:165245 48/198 (24%)
SNF2_N 776..1071 CDD:278600 115/307 (37%)
DEXDc 793..932 CDD:238005 60/147 (41%)
Helicase_C 1097..1212 CDD:278689 66/114 (58%)
SnAC 1304..1375 CDD:291293
Bromo_SNF2L2 1425..1530 CDD:99947
Etl1NP_609320.2 SNF2_N 292..587 CDD:278600 115/307 (37%)
DEXDc 308..453 CDD:238005 60/148 (41%)
Helicase_C 651..765 CDD:278689 66/114 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467143
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10799
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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