DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Marcal1

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster


Alignment Length:847 Identity:178/847 - (21%)
Similarity:323/847 - (38%) Gaps:201/847 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 ERIEKER--MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEE 623
            |..||:|  :.:|.|            ||.:.||...:...:..::.|...:...:.:....:.:
  Fly     8 EIAEKKRIALAKLQA------------KKSQLLASAPATNGKSTTSATGATQHANNGKSNPNQPQ 60

  Fly   624 GKRLIQF-------KKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLN 681
            .|..:.|       :|::..||...|.::.|...: .:..::|.:.::|:...|           
  Fly    61 AKSPLNFYRSPTGEQKKINRSGPTPGDNKSSSFLN-ALKAIKQTSNRELSRGAA----------- 113

  Fly   682 MHPGWDWIDDEEDSCGSNDDHKPKV-----EEQPTAT-------------EDATDKAQATGNDED 728
             ||       .:...|.|:.:||.:     :|:|.|.             ......||.:|..|.
  Fly   114 -HP-------YQRPNGGNERNKPTLSLSSDKEKPVAVLLGNSITCNLYLISTHRFAAQTSGYHEQ 170

  Fly   729 A----KDLITKA--------KVEDDEYRTEEQTYYSIAHTIH--------------EKVVEQASI 767
            .    |::.||.        ..:..:|::.:.....:...:|              ..||.:.|:
  Fly   171 LVTVFKNMPTKCYDGQTRIWSFDLSDYQSLKTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSV 235

  Fly   768 MVN------GTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYL 826
            :.:      ..|..:|..|:.:.::.....:   :.||||||||.|.:::..|..|.    .|.|
  Fly   236 LASIEPKLADQLMPFQQDGVCFAIAQKGRIM---ICDEMGLGKTYQALAVADYFKDD----WPLL 293

  Fly   827 IIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAK 891
            :....||..:|........|.| .:.|.     :.|..||:...:..||:|:|..:.:.:..|.:
  Fly   294 VCTTASTRDSWAKHIMDLLPKV-PIHYV-----QVLNNNQLYVGEAKVLITSYNMMERHEDKLMQ 352

  Fly   892 IQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYR-LLLTGTPLQNKLPELWALLNFLLPSIFKSC 955
            .::.::|.||.|.:||...|.|...........| :||:|||..::..||:..|..:........
  Fly   353 RKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMIDGKFMNFM 417

  Fly   956 STFEQWFNAPFATTG----EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIK 1016
            ....::.:...:|.|    .:..|.|.:.||.::        ::|||.|.||..||.:|....:.
  Fly   418 EFTTRYCDGKQSTFGWDANGQSNLEELKVILHLK--------YMLRRTKVEVLPQLAEKNRETVV 474

  Fly  1017 CDMSALQRVLYKHMQSKGVLLTDGSE-KGKHGKGGAKALM-----NTIVQLRKLCNHPFMFQHIE 1075
            .|.:    :::.:.::|..|.....| |...|:...:.|:     ...|:.|.:|.:.       
  Fly   475 LDPA----LVWTNAETKETLDAFNKELKTAKGRATEEILLRFYARTAEVKTRAVCAYL------- 528

  Fly  1076 EKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFG 1140
                           ..|.:...||.:.         .:|||:        |..|.|:|...:..
  Fly   529 ---------------KTLVKEQKKFIIF---------AHHRVM--------MDAISDFLSGLKVH 561

  Fly  1141 YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQ 1205
            |:|:||.|:::.|.:.:..|..| |...|.|||.:|...|:.|..|:.:|..:.||||....||:
  Fly   562 YIRIDGQTRSDHRSDSVDTFQKK-SSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAE 625

  Fly  1206 DRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFD---QKSTGS-------- 1259
            .|||||||...|....|:..|:.::.|....:   |..|.:.:.|:|.   ||:|.:        
  Fly   626 SRAHRIGQTKPVICRYLIAHNTADDIIWNMLK---NKQEVLSKVGIFAENLQKATHTAAPTSSHK 687

  Fly  1260 ---------------ER---QQFLQTILHQDDNEEEEENEVPDDEMINMMIAR--SEEEIEIFKR 1304
                           ||   :|:..||..::..|:....|:.........||.  ::::.|.|..
  Fly   688 IEEYFSPSTSTSLEPERNSIKQYFSTIPAKEPPEQNNNTEMTKVNKAESDIAAFFNDDDDEAFLE 752

  Fly  1305 MD 1306
            :|
  Fly   753 LD 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727 5/13 (38%)
BRK 649..693 CDD:197800 5/43 (12%)
PHA02934 687..>824 CDD:165245 33/186 (18%)
SNF2_N 776..1071 CDD:278600 71/305 (23%)
DEXDc 793..932 CDD:238005 39/139 (28%)
Helicase_C 1097..1212 CDD:278689 37/114 (32%)
SnAC 1304..1375 CDD:291293 1/3 (33%)
Bromo_SNF2L2 1425..1530 CDD:99947
Marcal1NP_608883.1 HARP 160..215 CDD:284784 9/54 (17%)
DEXDc 239..420 CDD:214692 47/193 (24%)
DEXDc 265..394 CDD:238005 39/141 (28%)
Helicase_C 518..632 CDD:278689 41/153 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467190
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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