DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and okr

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster


Alignment Length:830 Identity:216/830 - (26%)
Similarity:362/830 - (43%) Gaps:166/830 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 PMLKHLHRWLNMHPGWDWIDDEEDSCGSNDDHKPKVEEQPT-ATEDATDKAQA------TGNDE- 727
            |:||...|                ||....:.:.:::.:.. |..||::.::.      |.|.| 
  Fly    24 PLLKKNKR----------------SCQQELEREQELDRRRLGALRDASNTSELPLPIRFTANSEY 72

  Fly   728 ---DAKDLITKAKVEDDEYRTEE--------------------------QTYYSIAHTIHEKV-V 762
               .||.|..|.||..|.|..:.                          ..::..|:|.||:: :
  Fly    73 ELAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPMACNALVLFHPPAYTEHERMGM 137

  Fly   763 EQASIMV--------NGTLKEYQIKGLEWL---VSLYNNNLNG-ILADEMGLGKTIQTISLVTYL 815
            :...::|        :..|:.:|.:|:.::   |.....|.|| |:|||||||||:|.::||..|
  Fly   138 DPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTL 202

  Fly   816 M----DRKKVMGPYLIIVPLSTLPNWVLEFEKW-------APAVGVVSYKGSPQG--RRLLQNQM 867
            :    :.|..:...:::.|.|.:.||..||.||       .|..|     |:.:.  |.|.|..|
  Fly   203 LRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEG-----GTKENTIRALEQFSM 262

  Fly   868 RATKFN--VLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIA------PY 924
            .:.:..  |||.:||.......:|.|.:...:|.|||||:||..       |..|.|      ..
  Fly   263 TSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSD-------NLTYQALMGLKTKR 320

  Fly   925 RLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHK 989
            |:||:|||:||.|.|.::|:||:.|.:..:.:.|::.|.:.. ..|:..:..|:|....|.:..:
  Fly   321 RVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAI-LRGQNTDSTEQERQRAIEKTQE 384

  Fly   990 VL---RPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKH-MQSKGV--LLTDGSEKGKHGK 1048
            ::   ...::||..:.:...||.|.|.:|...::|:|..||.: ::|..|  .|.|.:||     
  Fly   385 LIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEK----- 444

  Fly  1049 GGAKALMNTIVQLRKLCNHP-FMFQHIEEKYCDHTGGHGVVSGPDLYR-------VSGKFELLDR 1105
             .:...:..|..|:|:|:|| .:::.:..:.........|:  |..|:       :||||.|||.
  Fly   445 -ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVL--PSNYKPKDLNPELSGKFMLLDF 506

  Fly  1106 ILPKLKAT-NHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFV 1169
            :|..::|. |.:|:|....||.:.:.|.....|::|::|||||...:.|.:::.:||...||.|:
  Fly   507 MLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFL 571

  Fly  1170 FLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILA 1234
            |:||::|||.||||..|:.:.:||.||||..|.||..|..|.||:....:.||:...|:||:||.
  Fly   572 FMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 636

  Fly  1235 AARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEI 1299
            ...:|.::...:|                         ||.|..|.....|::.::....:....
  Fly   637 RQTHKKSLSSTII-------------------------DNNESAEKHFTRDDLKDLFTFDANILS 676

  Fly  1300 EIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYDE---DTILGRGSRQRK 1361
            :...::..:|..::.::.|..|.....|.|..|          :|...:.   |.||.:.....|
  Fly   677 DTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQW----------YHCSNNRGLPDNILAQAWMDCK 731

  Fly  1362 EVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNRKEESDDDS 1411
            .|.:.  ...:...:.|...|   |||..|..:.|...||.....:.|||
  Fly   732 CVSFV--FHHRSQAQEIVPSA---EEEATDQPEEKPESRKRSSTPASDDS 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727
BRK 649..693 CDD:197800 4/21 (19%)
PHA02934 687..>824 CDD:165245 43/190 (23%)
SNF2_N 776..1071 CDD:278600 97/326 (30%)
DEXDc 793..932 CDD:238005 54/160 (34%)
Helicase_C 1097..1212 CDD:278689 50/115 (43%)
SnAC 1304..1375 CDD:291293 12/73 (16%)
Bromo_SNF2L2 1425..1530 CDD:99947
okrNP_476661.1 SNF2_N 159..466 CDD:278600 97/325 (30%)
DEXDc 179..328 CDD:238005 54/160 (34%)
HELICc 493..622 CDD:238034 52/128 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467189
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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