DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and Chd1

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster


Alignment Length:1642 Identity:434/1642 - (26%)
Similarity:655/1642 - (39%) Gaps:415/1642 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 GPPIGPPGAPGGPPPGSQHAGQPPVPPQQQQQPPPSAGTPPQCSTPPASNPYGPPVPGQKMQVAP 280
            |...|..|:.......|.::......|:.:.:....||.||..:...|.:........|:     
  Fly    50 GSGSGSSGSDSDSDSSSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQE----- 109

  Fly   281 PPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQP 345
              .....|...........||.. |:.|........|..|.||.::.: .|..:.....|:....
  Fly   110 --DSSSDGSSGSDSDSDAEGPSD-QRNQSINNANTSSSLPKPEQNEEE-DNETEAGQQQPASDAS 170

  Fly   346 LIPSSPMQPQVRGTLPGMPPGSQVPQPGGGPQR----QVPPAG------MPMPKPNRITTVAKPV 400
            ...||.....|..|  .....|:..:....|:|    :.||..      .|.||..:     |..
  Fly   171 ADESSDSSANVSPT--SSSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKK-----KTW 228

  Fly   401 GLDPITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRVLNFQRQLRMEFVQCT 465
            ..|.....::.::.::.       ..:|.||..:...:|.             |:|.|......:
  Fly   229 DSDESDESEDSDDEVST-------AQKRKPAATTSRSKLA-------------QQQQRRRVKPFS 273

  Fly   466 RRDTTLETALNIKLYKR--TKRQG----LREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHG 524
            ..|:..:.|     .||  |:|:|    .:||...|..:.:..||.                   
  Fly   274 SEDSDDDDA-----SKRCATRRKGAAVSYKEASEDEATDSEDLLEF------------------- 314

  Fly   525 KDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQ-ERIEKERMRR---------LMAEDEEGY 579
                |:..:..|..|          |.||.|:|.|. |||..:|..:         :.|.:|.|:
  Fly   315 ----EYDESQAATTA----------ATAEEEEKCETIERILAQRAGKRGCTGNQTTIYAIEENGF 365

  Fly   580 --RKLIDQKK----DKRLAFLLSQTD-EYISNLTQMVKQHKD---------DQMKKKEEE---GK 625
              ....|:|:    :....||:.... .||.|..:.....:|         |...|||:|   .:
  Fly   366 DPHAGFDEKQTPDAETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKKEKEQAYWR 430

  Fly   626 RL------------IQFKKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHR 678
            |.            ::.:.|||.|  |..:|.  |:|          .|.|  .||... ::|.:
  Fly   431 RYAGPEDIDYFECQLELQHELLKS--YNNVDR--IIA----------KGSK--PDDGTE-EYLCK 478

  Fly   679 WLNMHPGWDWIDDEEDSCGSNDDHKPKVEEQPTATEDAT------DKAQATGNDEDAKDLITKAK 737
            |.::                     |..|   :..|||.      .:.....||.::........
  Fly   479 WQSL---------------------PYAE---STWEDAALVLRKWQRCAEQFNDRESSKCTPSRH 519

  Fly   738 VEDDEYRTEEQTYYSIAHTIHEKVVEQASIMVNG-TLKEYQIKGLEWLVSLYNNNLNGILADEMG 801
            ....:||.:           ..::..|...:.:| ||::||:.||.||:..:....:.|||||||
  Fly   520 CRVIKYRPK-----------FSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMG 573

  Fly   802 LGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQ-- 864
            ||||||||..:..|.....:.||:|.:|||||:..|..||:.|||.:.||:|.|..:.|.|:|  
  Fly   574 LGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQY 638

  Fly   865 ----NQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYR 925
                ...:..|||.:|||||.|:|||..|..:||..:::||.||:||....|.:.|. .:...:|
  Fly   639 EWQFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLK-EFDTNHR 702

  Fly   926 LLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFE-QWFNAPFATTGEKVELNEEETILIIRRLHK 989
            ||:|||||||.|.||||||:|::|..|.:...|| |..||            |::.   ..|||:
  Fly   703 LLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNA------------EDKG---YTRLHQ 752

  Fly   990 VLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKAL 1054
            .|.|::|||:||:||..||.|||.|::.:|::||:..||.:.:|..   |...|||  :|.....
  Fly   753 QLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNF---DALRKGK--RGSTSTF 812

  Fly  1055 MNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLL 1119
            :|.:::|:|.|||..:.:..|.:.........:.:   |.:.|||..|||::|.:||.|.||||:
  Fly   813 LNIVIELKKCCNHAALIRPSEFELMGLQQDEALQT---LLKGSGKLVLLDKLLCRLKETGHRVLI 874

  Fly  1120 FCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQ 1184
            |.||.:.:.::.|||..|.|.:.||||:.|.|.|.:.|..|||:||..|.|||||||||||:||.
  Fly   875 FSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLA 939

  Fly  1185 TADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ- 1248
            |||||:||||||||..|||||.|||||||:|:|.:.||:|..||||:|:..|:.|:.:|..||| 
  Fly   940 TADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQR 1004

  Fly  1249 -----AGMFDQKSTG--SERQQF----LQTIL-------------HQDD------------NEEE 1277
                 ..:.|:...|  |....|    |..||             |.||            ....
  Fly  1005 MDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRN 1069

  Fly  1278 EENEVPDDEMINMM----IARSEEE--------------------------IEIFKRM--DAERK 1310
            |:.|:|.|::::..    ||..|||                          .|.|::.  |.||.
  Fly  1070 EDPEMPADDLLSAFKVASIAAFEEEPSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQERA 1134

  Fly  1311 KEDEEIH--PGRERLIDESELPDWLTKD-------DDEVERFHYQYDED--------TILGRGSR 1358
            ||.|:::  |.|:...:::|......|.       ||......|:...|        ...||.:.
  Fly  1135 KEMEDLYLPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGDSDYELGSDGSGDDGRPRKRGRPTM 1199

  Fly  1359 QRKEVDYTDS---------------------------LTEKEW--LKAI-----DDGAEFDEEEE 1389
            :.|...:||:                           |.||..  ||.:     |...:|..|.:
  Fly  1200 KEKITGFTDAELRRFIRSYKKFPAPLHRMEAIACDAELQEKPLAELKRLGEMLHDRCVQFLHEHK 1264

  Fly  1390 EDDSKRKRRKRKNRKEESDDDSLILKRRRRQ--------NLDKRSKKQMHKIMSAVIKHNQDGRT 1446
            |::|          |..:.|::...|:||.:        .:...:||        ::...|:.:.
  Fly  1265 EEES----------KTAATDETPGAKQRRARATFSVKLGGVSFNAKK--------LLACEQELQP 1311

  Fly  1447 LSEPFMKLPSRQRLPDYYEIIKRPV-DIKKILQRIEDCKY------------------ADLNELE 1492
            |:|....:|..::...:....:.|| |:...::  ||.|.                  ..|...:
  Fly  1312 LNEIMPSMPEERQQWSFNIKTRAPVFDVDWGIE--EDTKLLCGIYQYGIGSWEQMKLDPTLKLTD 1374

  Fly  1493 KDFMQLCQNAQIYNEEASLIYLDSIALQKVFV---GARQRITAAADAAAVAAGDNTGEAHGNGGS 1554
            |..:...:..|....:....||..|..:.|.:   |.|::....|..|      |..:|.....|
  Fly  1375 KILLNDTRKPQAKQLQTRAEYLLKIIKKNVELTKGGQRRQRRPRASRA------NDAKAASQSAS 1433

  Fly  1555 DNSDNDDDDGGDDGSDDEEIATTSAAAVKMKLKLNKSLAS---APATPTQSSSNVSSGAATTSKK 1616
            ...|....||.|...|...:|.:|.:.|      :.|.||   ||||.....         .:||
  Fly  1434 STIDAKPHDGEDAAGDARTVAESSNSQV------DPSTASPHNAPATEQHGD---------PAKK 1483

  Fly  1617 QTRRKRSQKKYTISDDD 1633
            ..:.|...||.:.||::
  Fly  1484 AKKSKARSKKTSASDNN 1500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903 28/148 (19%)
HSA 501..573 CDD:214727 15/81 (19%)
BRK 649..693 CDD:197800 7/43 (16%)
PHA02934 687..>824 CDD:165245 35/143 (24%)
SNF2_N 776..1071 CDD:278600 127/301 (42%)
DEXDc 793..932 CDD:238005 65/144 (45%)
Helicase_C 1097..1212 CDD:278689 71/114 (62%)
SnAC 1304..1375 CDD:291293 22/118 (19%)
Bromo_SNF2L2 1425..1530 CDD:99947 21/126 (17%)
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 8/47 (17%)
Chromo 458..509 CDD:278797 15/89 (17%)
SNF2_N 548..829 CDD:278600 127/301 (42%)
DEXDc 564..709 CDD:238005 65/145 (45%)
Helicase_C 852..967 CDD:278689 71/114 (62%)
DUF4208 1521..1610 CDD:290618
DUF3824 1795..>1894 CDD:289625
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467187
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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