DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and kis

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster


Alignment Length:1995 Identity:477/1995 - (23%)
Similarity:733/1995 - (36%) Gaps:622/1995 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHPMQHGPPGQGPPGHHMPPHHQGMIFSKGPHMG 89
            :.|.....|.....|..|  |..||..|..         |...||...|||            :|
  Fly  1034 EEPKTVEESGEDKSQSAP--GVAPPADPII---------PVTQPPQQQMPP------------IG 1075

  Fly    90 MQMPPTGPNMSPYQTHG---MPPNAPTQPCIVSPGGPPGGPPPPERSSQENLHALQRAIDSMEEK 151
            |.|.|..|.... |..|   |||..|..      ||.||..||.....|:.:.|||:.|      
  Fly  1076 MPMHPIAPGYEA-QAQGQGHMPPMMPPY------GGAPGMYPPYPMLHQQEIAALQQQI------ 1127

  Fly   152 GLQEDPRYSQLLAMRATSKHQHLNGNQVNLLRTQITAYRLLARNKPISMQMQQALQAAQQQPPPG 216
                    .:|..|....:.||    |..|:|.| ....||.::: ::.|.....|....|..| 
  Fly  1128 --------QELYCMPPGHELQH----QDKLMRMQ-ERLNLLTQHE-VNDQCAGGPQCLLFQNVP- 1177

  Fly   217 PPIGPPGAPGGPPPGSQHAGQPPVPPQQQQQPPPSAGTPPQCSTPPASNPYGPPV-PGQKMQVAP 280
            |..||||              .|:..||..:.|..:.|..:.....|:.|..|.. .|:|.||..
  Fly  1178 PMYGPPG--------------NPLLNQQMVESPQVSSTTGRGRGKSANKPRKPRAKKGEKAQVGQ 1228

  Fly   281 PPPHMQ----------------------------------------------------------- 286
            ....|.                                                           
  Fly  1229 QQDLMDISGNVAMGAANAVSSIPTTQLPVSEDCVTQGAGDTSVVGMLEYSEGMGDLSQDVHSANE 1293

  Fly   287 -------QGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQPP--PPEPHQHQLPNGGKPLS----- 337
                   .|:...|:.|:.    |....:||:.:..:::.|  |.:|:..:.|...|..:     
  Fly  1294 LDTSTDGSGKKKKPRKPRT----PKDPNKPPRDRTPKAKKPKDPNDPNSTETPAAVKKRAGASKR 1354

  Fly   338 ---MGPSG------GQPLIPSSPMQPQ----------------VRGTLPGMP--PGSQVPQPGGG 375
               .|..|      |..:..:.|:.|:                |.|..|...  |.|::|:....
  Fly  1355 RKQYGEDGAEQTGEGSEVEDNKPLVPKAGSADGEAETTSGGTGVDGESPDYDDIPVSKIPRGSNE 1419

  Fly   376 PQRQ----------VP-PAGMPMPKPNRIT------------------TVAKPVGLDPITLLQER 411
            .:::          || .||.|...|:|..                  :..|..|......|::|
  Fly  1420 DEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRNANSEEGGSARKNRGSLSAKALKKR 1484

  Fly   412 EN--RIAARISLRMQELQRLP-------ATMSEDLRLQAAIELRALRVLNFQRQLRMEFVQCTRR 467
            .|  ||..........|.|.|       :.|..:.|       |:.|  |.||:..::.|.....
  Fly  1485 RNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR-------RSSR--NTQRKKYIDDVMLRFS 1540

  Fly   468 D--TTLETALNIKLYK----------------RTKRQGLREARATEK---------LEKQQKLEA 505
            |  .:|..|..:|..|                :|:.|...|..|.::         |::..:|||
  Fly  1541 DDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSGAEGDAAQEVGEEKSNLPLDESSQLEA 1605

  Fly   506 E-------RKRRQKHLEF-------------------------LAAVLQHGKDLREF-------- 530
            .       .|.||...:.                         |...::.||  ||.        
  Fly  1606 SSSTSAVAEKERQISTDAANAAMSSKPNYVYINTGDEDSMVVQLVLAMRMGK--RELILDKPKEK 1668

  Fly   531 -----HRNNKAQL--ARMNKAVMNHHANAEREQKK-----EQERIEKERMRRLMAEDEE--GYRK 581
                 ....|::|  |..:|...:.....|.|.||     |:.::|...|.....|:.|  ..:|
  Fly  1669 APEPKQDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDDSKK 1733

  Fly   582 LIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEG 646
            ..:..|||.    ..:.|:.:....:..|..:..:..|.||..|.:.:.|...:::.::....| 
  Fly  1734 SDEDNKDKD----KMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTADHAKEPE- 1793

  Fly   647 SIVADMRV--------HVVEQCTG--KKLTGDDAP---MLKHLHRWLNMHPGWDWIDDEEDSCGS 698
            :::..|.|        ..|.:..|  :|.|.|..|   ..:.....|.:....:.:.:.|:|...
  Fly  1794 TVLEKMEVDEKANDDQSAVSKAEGSDEKSTDDSNPEEATTEKNKESLEIEGEKERVKEGEESVKK 1858

  Fly   699 NDDHKPK--VEEQPTAT-------------------EDATDKAQATG------------------ 724
            .:|.|.:  :|.:|...                   |..|::....|                  
  Fly  1859 ENDEKTEADMENKPEPVFIDVEEYFVKYRNFSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQ 1923

  Fly   725 -----NDEDAK--------DLITKAKVEDDEYRTEEQTYYSI----------------------- 753
                 |.||..        |.:....|..||...|...:|.:                       
  Fly  1924 LNIFENIEDEPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDCTWELEEDVDNDKI 1988

  Fly   754 --------------------AHTIHEKVVEQASIMVNG-TLKEYQIKGLEWLVSLYNNNLNGILA 797
                                .|....|.:|:..:...| :|:.||::||.||...:.|..|.|||
  Fly  1989 EQYLRFNKIPQRSEWKSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILA 2053

  Fly   798 DEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRL 862
            ||||||||||:::.| :.:....:.||:|:|.||||:|||..|||.|.. :.||.|.||...:::
  Fly  2054 DEMGLGKTIQSLTFV-HSVYEYGIRGPFLVIAPLSTIPNWQREFEGWTD-MNVVVYHGSVTSKQM 2116

  Fly   863 LQNQ------------MRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQV 915
            :|:.            ....|||||:||:|.::.|...|....|:..:|||.||:||.:|||.:.
  Fly  2117 IQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEG 2181

  Fly   916 LNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEET 980
            |....: .:|:||:||||||.:.||::|||||.||.|.|...|...|.:          |..||.
  Fly  2182 LRQLNL-EHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGS----------LRTEEE 2235

  Fly   981 ILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGS--EK 1043
               :.:|..:|:|.:|||||.:||..|..|.|.||:.:::.:|:..|     :|:|..:.|  :|
  Fly  2236 ---VNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYY-----RGILEQNFSFLKK 2292

  Fly  1044 GKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEK-YCDHTGGHGVVSGPDLY-----RVSGKFEL 1102
            |. .......||||:::|||.|.||::....||: ..|....||  ..|:.|     ..:||..|
  Fly  2293 GT-TSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHG--EDPESYYKNLILSAGKMVL 2354

  Fly  1103 LDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDV 1167
            :|::||||||..||||:|.||.:|:.|:||||.:|::.:.|:||..:...|.|.:.:::..|||.
  Fly  2355 IDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDR 2419

  Fly  1168 FVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERI 1232
            |||||.|:|||||:||..||||:|:||||||..|||||.|.||||||..|::.||:..|:.|..:
  Fly  2420 FVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREM 2484

  Fly  1233 LAAARYKLNMDEKVIQAGMFDQKSTGSERQ---QFLQTILHQ--------DDNEEEEENEVPDDE 1286
            ...|..||.:|:.|:|:........|:.:|   :.::.:|.:        |||..::..|...|.
  Fly  2485 FDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDKFCEEDIDS 2549

  Fly  1287 MI---NMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTK-------DDDEVE 1341
            ::   ..:|....|:...|.:..........:|      .||:   ||:.||       |.|..|
  Fly  2550 ILKRRTQVITMESEKGSTFSKASFAASGNRSDI------TIDD---PDFWTKWAKKVDIDPDACE 2605

  Fly  1342 RFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDD-----------SKR 1395
            |   ...||.:|....|:.:...|           ..:|..|.:.||..::           |:|
  Fly  2606 R---DETEDLVLSEPRRRTQIKRY-----------GHEDVMELNSEESSNENSDEEGGIGLRSRR 2656

  Fly  1396 KRRKRKNRKEESDDDSLILKRR--------RRQNLDKRSKKQMHKIMSAVIKHNQDGRTLSEPFM 1452
            ::.||...:|:..:|..|.:.|        ........:|.:..|:...::.... ||       
  Fly  2657 RKEKRDRAREKKGNDEYIPRERDALAALGLEEIQYGNWAKSECFKVEKGLLSFGW-GR------- 2713

  Fly  1453 KLPSRQRLPDYYEIIK--------RPVDIKKILQRIEDCKYADLNELEKDFMQLCQNAQIYNEEA 1509
                      :.|:::        |.||       :|||        .:..:..|  .|:|..:.
  Fly  2714 ----------WSELLELGQFKRGWRDVD-------VEDC--------ARIILLYC--LQVYKGDE 2751

  Fly  1510 SLIYLDSIALQKVFV---------GARQRIT-------------------------AAADAAAVA 1540
            .:         |.|:         |..|:|:                         .:..|...|
  Fly  2752 KI---------KTFIWDLITPTEDGEVQKISRDHSGLHNLVPRGRNGGKSNKESTGVSTPAPGSA 2807

  Fly  1541 AGDNTGE---AHGNGGSDNSDNDDDDGGDDGSDDEEIATTSAAAV 1582
            :|.|:|.   ||.:...|.||.  |.||.:       |:..||||
  Fly  2808 SGSNSGNTTPAHKSSALDGSDK--DSGGIN-------ASAVAAAV 2843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931 8/29 (28%)
Drf_FH1 251..390 CDD:283903 36/250 (14%)
HSA 501..573 CDD:214727 22/123 (18%)
BRK 649..693 CDD:197800 9/56 (16%)
PHA02934 687..>824 CDD:165245 45/232 (19%)
SNF2_N 776..1071 CDD:278600 122/308 (40%)
DEXDc 793..932 CDD:238005 62/150 (41%)
Helicase_C 1097..1212 CDD:278689 64/114 (56%)
SnAC 1304..1375 CDD:291293 16/77 (21%)
Bromo_SNF2L2 1425..1530 CDD:99947 18/121 (15%)
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 41/237 (17%)
HepA 1676..2527 CDD:223627 268/879 (30%)
SDA1 <1693..>1854 CDD:283052 30/165 (18%)
CHROMO <1879..1919 CDD:237991 3/39 (8%)
Chromo 1941..1996 CDD:278797 6/54 (11%)
DEXDc 2048..2197 CDD:238005 62/151 (41%)
Helicase_C 2350..2464 CDD:278689 64/113 (57%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467114
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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