DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Chd7

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001264078.1 Gene:Chd7 / 320790 MGIID:2444748 Length:2986 Species:Mus musculus


Alignment Length:2001 Identity:504/2001 - (25%)
Similarity:776/2001 - (38%) Gaps:557/2001 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASPSPANSPMPPPQAP----------------------------SPMAPPSQSPAPSPHSPYPH 37
            :|||.......|.||.|                            |...|.:........:||..
Mouse    97 LASPHSQYHTPPVPQVPHGGGGGGQMGVYPGIQNERHGQSFVDGGSMWGPRAVQVPDQIRAPYQQ 161

  Fly    38 QQPGPL-QGPPPPGHP------GAY-----GHPMQHGPP----GQGPPGHHMPPHHQGMIFSKGP 86
            |||.|. .|||..|||      |:|     ....|||.|    ||...|..........|.:.||
Mouse   162 QQPQPAPSGPPAQGHPQHMQQMGSYLARGDFSMQQHGQPQQRMGQFSQGQEGLSQGSPFIATSGP 226

  Fly    87 HMGMQMPPTGPNMSPYQTHGMPPNAPTQPCIV-----------SPGGPPGG-------------- 126
            .....||...|:|:|...|.:.......|..:           ||..|..|              
Mouse   227 GHLSHMPQQSPSMAPSLRHPVQQQFHHHPAALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRNQ 291

  Fly   127 --PPPPERSSQE-------NLH-ALQRAIDSMEEKGL-------QEDPRYSQLLAMRATS----K 170
              |.|...:|.:       ||: .|..:....:..||       |..|||...:...:.|    .
Mouse   292 TVPSPTVNNSGQYSRYPYSNLNQGLVNSTGMNQNLGLTNSTPMNQSVPRYPNAVGFPSNSGQGLV 356

  Fly   171 HQ---HLNGNQVNLLRTQITAYRLLARNKPISMQMQQALQAAQQQPPPGPPIGPPGAPGGPPPGS 232
            ||   |.:|: :|.:.||             :|...|. |.....|||..|:.....|.|.||..
Mouse   357 HQQPIHSSGS-LNQMNTQ-------------TMHPSQP-QGTYASPPPMSPMKAMSNPAGTPPPQ 406

  Fly   233 QHAGQPPVP-----------PQQQQQPPPSAGTPPQCSTPPASNPYGPPVPGQKMQVAPPPPHMQ 286
            ...|...:|           ||...|||.:.|...:     ...|.....|...|.::..|..: 
Mouse   407 VRPGSAGMPMEVGSYPNMPHPQPSHQPPGAMGIGQR-----NMGPRNMQQPRSFMGMSSAPREL- 465

  Fly   287 QGQPLPPQPPQVG--GPPPIQQQQPPQQQQQQSQP--------PPPEPHQ--HQLPNGGKPLSMG 339
            .|...|...|.||  .|..||::..|.||....||        ||.:||.  ||           
Mouse   466 TGHMRPNGCPGVGLADPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHQ----------- 519

  Fly   340 PSGGQPLIPSSPMQPQVRGTLPGMPPGSQV-PQPGGGPQR----QVPPAG--MPMPKPNRITTVA 397
                     |||..|..:       |.:|: |.|...||:    |..|:.  :..|.|:.....|
Mouse   520 ---------SSPPHPHHQ-------PWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSA 568

  Fly   398 KPVGL----DPITLLQE---------RENRIAARIS------------LRMQELQRL-------- 429
            :...|    |.:..:::         :.|.|||..|            :..|||:|.        
Mouse   569 QNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIAAGDSSKGFGKDDFPGGVENQELRRNSLDVSQEE 633

  Fly   430 ------------PATMSEDLRLQAAIELRALRVLNFQRQLRMEFV----QCTRRDTTLETALNIK 478
                        |....|....:.....:|.::....::.:.:.|    :.:::.:..:......
Mouse   634 KKKKKRPKVKKDPKESKEPKEKKEPKTPKAPKIPKEPKEKKAKTVTPKPKSSKKSSNKKPDSEAS 698

  Fly   479 LYKRTKRQGLREARATEKLEK-------------------QQKLEAERKRRQKHLEFLAAVLQHG 524
            ..|:...:|..|......|:|                   :...:.:|||..:.|||..:. :..
Mouse   699 ALKKKVNKGKTEGSENSDLDKTPPPSPAPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISD-EEA 762

  Fly   525 KDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQER--IEKERMRRLM---------AEDEEG 578
            .|.....|::.:..::           :|:::..:.|.  :||....||:         .|.||.
Mouse   763 DDADAAGRDSPSNTSQ-----------SEQQESVDAEGPVVEKIMSSRLVKKQKESGEEVEVEEF 816

  Fly   579 YRK-------------LIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQF 630
            |.|             :.|.:||||:                   |.|..:.|.|:.:.|.|.:.
Mouse   817 YVKYKNFSYLHCQWASVEDLEKDKRI-------------------QQKIKRFKSKQGQSKFLSEI 862

  Fly   631 KKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDD--APMLKHLHRWLNMHPGWDWIDDEE 693
            :.: |.:.:|:.:|        |:....:.|      ||  .|::.:|.:|.::        ..|
Mouse   863 EDD-LFNPDYVEVD--------RIMDFARST------DDRGEPVIHYLVKWCSL--------PYE 904

  Fly   694 DSCG--SNDDHKPKVE--EQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIA 754
            ||..  ..|..:.|:|  |:..:.|..|::.:....|:      .|......||:.         
Mouse   905 DSTWELKQDIDQTKIEEFEKLMSREPETERVERPPADD------WKKSESSREYKN--------- 954

  Fly   755 HTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRK 819
                           |..|:|||::|:.||:..:.|..|.|||||||||||||:|:.: |.:..|
Mouse   955 ---------------NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLK 1003

  Fly   820 KVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQ--------NQMR----ATKF 872
            .:.||:|:|.||||:|||..||..|. .:.||.|.||...||.:|        .|.|    :.||
Mouse  1004 GIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKF 1067

  Fly   873 NVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKL 937
            :.::||:|.::.|...|..|.|:.::|||.||:||.:|||.:.|....: .:::|||||||||.:
Mouse  1068 HAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDL-EHKVLLTGTPLQNTV 1131

  Fly   938 PELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 1002
            .||::||:||.||.|.|.:||.|.|.          :|..||.   :::|..:|:|.:|||||::
Mouse  1132 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQ---VQKLQAILKPMMLRRLKED 1183

  Fly  1003 VEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKA----LMNTIVQLRK 1063
            ||..|..|.|.||:.:::.:|:..|:.:..|.....        .|||.:|    |:||:::|||
Mouse  1184 VEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFL--------SKGGGQANVPNLLNTMMELRK 1240

  Fly  1064 LCNHPFMFQHIEEKYCDHTGGHGVVSGPD-----LYRVSGKFELLDRILPKLKATNHRVLLFCQM 1123
            .||||::....|||..:..........||     :.:.:||..|:|::||||||..||||:|.||
Mouse  1241 CCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQM 1305

  Fly  1124 TQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADT 1188
            .:|:.|:||||..|::.|.|:||..:...|...:.:|:...||.|||||.|||||||:||..|||
Mouse  1306 VRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT 1370

  Fly  1189 VVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFD 1253
            .:||||||||..|||||.|.|||||...|::.||:|.||.|..:...|..||.:|:.|:|:....
Mouse  1371 CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1435

  Fly  1254 QKSTGSERQ---QFLQTILHQDD----NEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKK 1311
            :.:|...:|   :.::.:|.:..    .:||:|.....:|.|:.::.|....|.|..........
Mouse  1436 ENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFA 1500

  Fly  1312 EDEEIHPGRE---RLIDESELPDWLTKDDDEVERFHYQYDEDTILGRGS------RQRKEVDYTD 1367
            :...:..|..   .|.|.:....|..|         .:.|.|.:.||.:      |.||:.....
Mouse  1501 KASFVASGNRTDISLDDPNFWQKWAKK---------AELDIDALNGRNNLVIDTPRVRKQTRLYS 1556

  Fly  1368 SLTEKEWLKAIDDGAEFDEEEE--------EDDSKRKRRKRKNRKEES--------DDDSLILKR 1416
            ::.|.|.::..|  .|.|.||:        :|.|:...|....|.|::        ..|.|...|
Mouse  1557 AVKEDELMEFSD--LESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGRWTDILSHGR 1619

  Fly  1417 RRRQNLDK-----------------RSKKQMHKIMSAVIKHNQDGRT--------LSEPF----- 1451
            .:||..::                 |..:.:...:..:|....||:|        ||.|.     
Mouse  1620 YKRQLTEQDVETICRAILVYCLNHYRGDENIKSFIWDLITPTADGQTRALLNHSGLSAPVPRGRK 1684

  Fly  1452 ---MKLPSRQRL-----------PD-------YYEIIKRPVDIKKILQRIEDCKYADLNELEKDF 1495
               :|..|.|.:           ||       |.:.:|.  ...|:|.|:....|.....:....
Mouse  1685 GKKVKAQSTQPVVHDAHWLASCNPDALFQEDSYKKHLKH--HCNKVLLRVRMLYYLRQEVIGDQA 1747

  Fly  1496 MQLCQNA----------QIYNEEASLIYLDSIALQKVFVGA-------------------RQRIT 1531
            .::.:.|          :.::.|....:.|..|.:.:.:|.                   .:|: 
Mouse  1748 EKILEGADSSEADVWIPEPFHAEVPTDWWDREADKSLLIGVFKHGYEKYNSMRADPALCFLERV- 1811

  Fly  1532 AAADAAAVAAGDNTGEAHGNGGSDNSDNDDDDGGDDGSDDE--EIATTSAAAVKMKLKLNKSLAS 1594
            ...||.|:||.....:...:||         |||:...:||  |...|.|   ..|.:::: .|:
Mouse  1812 GMPDAKAIAAEQRGTDMLADGG---------DGGEFDREDEDPEYKPTRA---PFKDEIDE-FAN 1863

  Fly  1595 APATPTQSSSNV-SSGA-------------ATTSKKQTRRKR----SQKKY 1627
            :||...:.|..| |||.             ..||...||.:|    .|:.|
Mouse  1864 SPAEDKEESMEVHSSGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSY 1914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622 6/28 (21%)
Pro-rich <247..401 CDD:464580 42/172 (24%)
PTZ00121 <477..651 CDD:173412 38/216 (18%)
HSA 501..573 CDD:214727 14/82 (17%)
BRK 650..691 CDD:462196 7/42 (17%)
PLN03142 739..>1368 CDD:215601 239/665 (36%)
Bromo_SNF2L2 1425..1530 CDD:99947 24/167 (14%)
Chd7NP_001264078.1 Glutenin_hmw <23..553 CDD:367362 118/503 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..146 8/48 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..180 11/20 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..246 15/51 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..307 7/45 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 372..412 14/53 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 461..792 65/370 (18%)
CD1_tandem_CHD5-9_like 786..850 CDD:349315 17/82 (21%)
CD2_tandem_CHD5-9_like 869..926 CDD:349310 16/78 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 928..949 4/26 (15%)
PLN03142 957..>1556 CDD:215601 236/631 (37%)
DEAH box 1095..1098 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1566..1590 7/25 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1826..1851 8/33 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2151..2274
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2366..2393
BRK 2552..2593 CDD:462196
BRK 2631..2675 CDD:197800
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2812..2861
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2924..2986
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.