DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and chd-3

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_510140.1 Gene:chd-3 / 181421 WormBaseID:WBGene00000482 Length:1787 Species:Caenorhabditis elegans


Alignment Length:1630 Identity:420/1630 - (25%)
Similarity:670/1630 - (41%) Gaps:446/1630 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 QHQLPNGGKP------LSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQP-----GGGPQRQ 379
            ||:..:|.:.      |:.|...|:..:.....:.:...: .|:|..|:..:|     .||.:..
 Worm     5 QHESIDGDETMEEDSMLAEGHEDGEEDVGEDEEEVETEES-QGVPTTSEKKKPPPKKKKGGKKSS 68

  Fly   380 VPPAGMPMPKPNRITT--VAKPVGLDPITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAA 442
            ........|.|.:.|:  ::..:||..:.:..|:|                         ..|:.
 Worm    69 KKKNNCDYPDPYKSTSAEISAAIGLTDVDVDYEQE-------------------------EFQSI 108

  Fly   443 IELRALRVLNFQRQLRMEFVQCT--RRDTTLETALNIKLYKRTKRQGLREARATEKLEK------ 499
            ..|:     ||...::...::..  ...|.:.....:| ||..:.......::.:|.::      
 Worm   109 TNLK-----NFSSLVKPYILKVNPGTNVTKMYPLFQVK-YKEFQDHMTAHGKSIQKQQRAKFVPV 167

  Fly   500 ------QQKL-------EAERKRR----------QKHLEFLAAVLQHGKDLREFHRNNKAQLARM 541
                  |:|:       .|.||||          ....||.|.:.||.|...|..:..:.  ||:
 Worm   168 PVPVTPQEKIIPQKTRSSARRKRRDGSDGEGGGHDSDQEFEALIKQHEKQQDEAEKGKEE--ARI 230

  Fly   542 NKAVMN--------HHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQT 598
            |:|...        ..|.|.:..:|||..:|:.........:::|...|.|   ....|:.::..
 Worm   231 NRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGELMLCD---TCTRAYHVACI 292

  Fly   599 DEYISNLTQ---------MVKQHKDDQMKKKEEEGK------RLIQFKKELLM----SGEY---- 640
            ||   |:.|         ..::|..|.:..:||..|      |:.:....:|:    ...|    
 Worm   293 DE---NMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKETSNILLCDTCPSSYHAYC 354

  Fly   641 -----IGIDEGS------IVAD--MRVHVV--------------EQCTGKKLTGDDAPM------ 672
                 ..|.||.      |:.:  .|:..:              |...|::.:.||..:      
 Worm   355 IDPPLTEIPEGEWSCPRCIIPEPAQRIEKILSWRWKEISYPEPLECKEGEEASKDDVFLKPPRKM 419

  Fly   673 -----------LKHLHRW-----------------LNMHPGWDWIDDE-----EDSCGS--NDDH 702
                       .|:|..|                 :.|:  |..:|.|     |:|..|  :.||
 Worm   420 EPRREREFFVKWKYLAYWQCEWLSETLMDVYFTALVRMY--WRKVDSENPPIFEESTLSRHHSDH 482

  Fly   703 KP------------KVE-----------------------------EQPTATEDATDKA------ 720
            .|            |.|                             |..|...|.||.|      
 Worm   483 DPYKLRERFYQYGVKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDTDIANYEDAI 547

  Fly   721 -------QATGNDE---DAKDLITKAK------VEDDEYRTEEQTYYSIAHTIHEKVVEQASIM- 768
                   :...|||   :.:.:|.|.:      .::||..:..:....|  .|.:|...|...: 
 Worm   548 IKYWHHRERMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKKREKI--DILKKYEVQPDFIS 610

  Fly   769 -VNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLS 832
             ..|.|..||::|:.||...::|..:.|||||||||||:|:::.:..||......||:||..|||
 Worm   611 ETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675

  Fly   833 TLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQ--------------------MRATKFNVLLT 877
            |:.||..|.|.|.|...||:|.|..:.|.:::..                    :...||:||||
 Worm   676 TIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLT 740

  Fly   878 TYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWA 942
            :||.:..|||:|:.|.|..:::||.||:||:.....:.|. .|...||:|||||||||.|.||:.
 Worm   741 SYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLR-EYNIQYRVLLTGTPLQNNLEELFH 804

  Fly   943 LLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQL 1007
            |||||.|..|....:|          |.|..|:::|:.   |.:||.:|.|.:|||||.:|...:
 Worm   805 LLNFLAPDRFNQLESF----------TAEFSEISKEDQ---IEKLHNLLGPHMLRRLKADVLTGM 856

  Fly  1008 PDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAK-ALMNTIVQLRKLCNHPFMF 1071
            |.|.|.|::.::||:|:..||:      :||...:......||.: :|:|.|::|:|.||||::|
 Worm   857 PSKQELIVRVELSAMQKKYYKN------ILTRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLF 915

  Fly  1072 QHIEEKYCDHTG--GHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYL 1134
            .    |.|....  .:|:..|..|.:.:|||.||.::|.|||...||||:|.|||..:.|:||:.
 Worm   916 M----KACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFC 976

  Fly  1135 GWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPH 1199
            ....:.|.|:||:...:.|.:.:.::||.|:..|||||||||||||:||.|||||:|:|||||||
 Worm   977 DVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPH 1041

  Fly  1200 QDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQF 1264
            .|:||..||||:||:::|.:.|.:|..||||||.:.|:.|:.:...|::||: ..|...|..:..
 Worm  1042 NDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGL-GAKDGKSMSKTE 1105

  Fly  1265 LQTILHQDDNEEEEENEVP---------------------DDEMINMMIARSEEEIEIFKRMDAE 1308
            |..:|.....|..:|.|.|                     ||..::.::.|::||    :..|.|
 Worm  1106 LDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRNKEE----EGQDGE 1166

  Fly  1309 RKKE--DEEIHPGRERLIDESELPDWLTKDDDEVE--------------------RFHYQYDEDT 1351
            :|:.  :|.:...:....:..|..|   .||||.|                    :.||:.|::|
 Worm  1167 KKEHWTNEYLSSFKVATYNTKEADD---ADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQDQET 1228

  Fly  1352 ---ILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNRKEESDDDSLI 1413
               .||:|.|.|::|:|......::|      .|:.::::||||.          .|...|:..:
 Worm  1229 ELQKLGKGKRVRRQVNYASENMGQDW------SAQNNQQQEEDDG----------SEYGSDNGEL 1277

  Fly  1414 L-------KRRRRQNLDKRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKR-- 1469
            |       :||||:  ::||:    |:...:.|.|.....|.     ...||| ..:|..:.|  
 Worm  1278 LQTDEDYEERRRRR--EERSE----KLPPLLAKVNGQIEVLG-----FNPRQR-KAFYNAVMRWG 1330

  Fly  1470 --PVDIKKILQRIEDCKYADLNELEKDF--------MQLCQ----NAQIY---------NEEA-- 1509
              |.|:.:...::.|.:    |:.||.|        ..||:    |:..:         |.:|  
 Worm  1331 MPPQDLTQSSWQVRDLR----NKSEKVFKAYSSLFMRHLCEPVVDNSDSFMDGVPREGLNRQAVL 1391

  Fly  1510 SLIYLDSIALQKV-----FVG------ARQRITAAADAAAVAAGDNTGEAHGNGGSDNSDNDDDD 1563
            |.|.|.||..:||     |.|      .|:::.|.|..|:|:      ...|.........|.|:
 Worm  1392 SRIGLMSILRKKVQEFEKFNGEWSMPETREKMLATAAQASVS------NLPGMIKIKEEPIDIDE 1450

  Fly  1564 GGDDGSDDEEIATTSAAAVKMKLKLNKSLASAPATPTQSSSNVSSGAATTSK----KQTRRKRSQ 1624
            ...| .|...|..|...|.::|:   :....||..|.:  .|:..|..|...    .:.:..|:.
 Worm  1451 TPMD-VDQSNITKTEELASEVKV---EEEPKAPRLPYK--FNICDGGYTELHSLWINEEKVARNG 1509

  Fly  1625 KKYTI 1629
            |:|.|
 Worm  1510 KEYEI 1514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622
Pro-rich <247..401 CDD:464580 15/87 (17%)
PTZ00121 <477..651 CDD:173412 48/244 (20%)
HSA 501..573 CDD:214727 23/96 (24%)
BRK 650..691 CDD:462196 10/90 (11%)
PLN03142 739..>1368 CDD:215601 248/699 (35%)
Bromo_SNF2L2 1425..1530 CDD:99947 33/142 (23%)
chd-3NP_510140.1 CHDNT 97..150 CDD:462357 10/83 (12%)
TNG2 <180..311 CDD:227367 30/138 (22%)
PHD1_CHD_II 268..309 CDD:277006 8/46 (17%)
PHD2_CHD_II 330..372 CDD:277007 6/41 (15%)
CD1_tandem_CHD3-4_like 377..460 CDD:349314 9/84 (11%)
CD2_tandem_CHD3-4_like 498..552 CDD:349309 7/53 (13%)
PLN03142 564..>1129 CDD:215601 223/591 (38%)
DUF1087 1199..1248 CDD:461922 11/48 (23%)
CHDII_SANT-like 1299..1418 CDD:461920 29/128 (23%)
CHDCT2 1512..1662 CDD:462358 2/3 (67%)
Blue background indicates that the domain is not in the aligned region.

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