DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and smrc-1

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_741192.1 Gene:smrc-1 / 175907 WormBaseID:WBGene00015806 Length:690 Species:Caenorhabditis elegans


Alignment Length:531 Identity:131/531 - (24%)
Similarity:219/531 - (41%) Gaps:111/531 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   795 ILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVG---VVSYKGS 856
            :|||||||||::|.:::..|.    |...|.||:.|.|....|..:...:.|.:.   :|.....
 Worm   219 LLADEMGLGKSVQALTIARYY----KADWPLLIVCPASVKGAWKKQLNTFFPIIHRIFIVDKSSD 279

  Fly   857 PQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQV-LNTHY 920
            |.......|       .|.:.:||.::....:|.|.:::.:|.||.|.:|:...:.|:| .:...
 Worm   280 PLPDVCTSN-------TVAIMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSK 337

  Fly   921 IAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWF----NAPFATTGEKVELNEEETI 981
            :|.:.:||:|||..::..||:..:..:...:|.:...|...:    ...|....:....:||...
 Worm   338 VALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAA 402

  Fly   982 LIIRRLHKVLRPFLLRRLKKEVEHQLPDK---VEYI----IKCDMSALQ--RVLYKHMQSKGVLL 1037
            ::.:||       ::||||.:|...||:|   |.|:    |...|..||  |..|:.:.|.    
 Worm   403 IMFKRL-------MIRRLKADVLKDLPEKRREVVYVSGPTIDARMDDLQKARADYEKVNSM---- 456

  Fly  1038 TDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFEL 1102
                 :.||........:..||:...:|      :||.|.|          ..||          
 Worm   457 -----ERKHESLLEFYSLTGIVKAAAVC------EHILENY----------FYPD---------- 490

  Fly  1103 LDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDV 1167
                     |...:||:|......:..|:..:..|:.|.:|:||.|.:..|..|...|.. ..::
 Worm   491 ---------APPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCDSFQT-DDNI 545

  Fly  1168 FVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTV------- 1225
            .|.:||..|.|:|:.|..|..||..:..:||...:||:|||||:||::.|.|..|:..       
 Worm   546 RVAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVM 610

  Fly  1226 -NSVEERILAAARYKLNMD------------EKVIQAGMFDQ-KSTGSERQQFLQTILHQDDNEE 1276
             |.|::::....:..|:.|            ....|.|:.:. |.|..      .||...:|..|
 Worm   611 WNMVQQKLDVLGQVSLSSDTFRTADKMHLRFNDAAQPGIAEYLKKTPD------TTIDEWEDPVE 669

  Fly  1277 EEENEVPDDEM 1287
            |:|    ||::
 Worm   670 EKE----DDDL 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622
Pro-rich <247..401 CDD:464580
PTZ00121 <477..651 CDD:173412
HSA 501..573 CDD:214727
BRK 650..691 CDD:462196
PLN03142 739..>1368 CDD:215601 131/531 (25%)
Bromo_SNF2L2 1425..1530 CDD:99947
smrc-1NP_741192.1 HARP 118..169 CDD:462166
DEXHc_HARP_SMARCAL1 200..412 CDD:350768 49/210 (23%)
SF2_C_SNF 474..601 CDD:350180 44/162 (27%)
Blue background indicates that the domain is not in the aligned region.

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