DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Chd4

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:XP_006237458.1 Gene:Chd4 / 117535 RGDID:620064 Length:1956 Species:Rattus norvegicus


Alignment Length:1623 Identity:402/1623 - (24%)
Similarity:624/1623 - (38%) Gaps:494/1623 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 PPGSQVP------QPGGGPQRQVPPAGMP------MPKPNRITTVAKPVGLDPITLLQERENRIA 416
            ||..:||      :.|.||..:..|.|.|      .|||.::..:...:|               
  Rat   250 PPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLG--------------- 299

  Fly   417 ARISLRMQELQRLPATMSEDLRLQAAIE---LRALRVLNFQRQLRMEFVQCTRRDTTLETALNIK 478
                 .....::..::..:||.:::..:   :.:..|.:....      :.:|....|.||    
  Rat   300 -----GFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTS------RSSRSRKKLRTA---- 349

  Fly   479 LYKRTKRQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDL-------REFHRNNKA 536
               :.|::|..|..|.:..|..            |.:: ..|.|.|.::       |.:|     
  Rat   350 ---KKKKKGEEEVTAVDGYETD------------HQDY-CEVCQQGGEIILCDTCPRAYH----- 393

  Fly   537 QLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEY 601
                  ...::.......|.|......|||.::....||.                   |:.:|.
  Rat   394 ------MVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDN-------------------SEGEEI 433

  Fly   602 ISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVE-------- 658
            :           ::.....|||....::|.:.....||.:..|  :..:...:|.:.        
  Rat   434 L-----------EEVGGDPEEEDDHHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPN 485

  Fly   659 ------QCTGKKLTG--------------------------DDAPMLKHLH---------RW--- 679
                  :||...|.|                          .:.|..|.|.         :|   
  Rat   486 GEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVKWQGM 550

  Fly   680 ------------LNMH-----------------PGWDWIDDEEDS-CGSNDDHK-PKVEEQ---- 709
                        |.:|                 |..|:..|||.| ...|.|.| .::||:    
  Rat   551 SYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNKDPKFAEMEERFYRY 615

  Fly   710 ---------PTATEDATDKA---------------QATGNDEDAKDLITKAKVEDDEYRTEEQTY 750
                     ......:.||.               ||:...||         ||..:|...:|:|
  Rat   616 GIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED---------VEIQDYDLFKQSY 671

  Fly   751 YSIAHTIH------------------EKVVEQASI--------------MVNGTLKEYQIKGLEW 783
            ::....:.                  |:..|..::              ...|||..||::||.|
  Rat   672 WNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736

  Fly   784 LVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAV 848
            |...:....:.|||||||||||:||...:..|.......||:|:..||||:.||..|||.|||.:
  Rat   737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDM 801

  Fly   849 GVVSYKGSPQGRRLLQ--------NQMR------------ATKFNVLLTTYEYVIKDKAVLAKIQ 893
            .||:|.|....|.:::        |.:|            :.||:||||:||.:..|.|:|..|.
  Rat   802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSID 866

  Fly   894 WKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTF 958
            |..:|:||.||:||:..|..:||| .|...::||||||||||.|.||:.|||||.|..|.:...|
  Rat   867 WACLIVDEAHRLKNNQSKFFRVLN-GYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGF 930

  Fly   959 EQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQ 1023
            .:.|          .::.:|:.   |::||.:|.|.:|||||.:|...:|.|.|.|::.::|.:|
  Rat   931 LEEF----------ADIAKEDQ---IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQ 982

  Fly  1024 RVLYKHMQSKGVLLTDGSEK-GKHGKGGAKALMNTIVQLRKLCNHPFMF--QHIEEKYCDHTGGH 1085
            :..||:      :||...|. ...|.|...:|:|.::.|:|.||||::|  ..:|.....    :
  Rat   983 KKYYKY------ILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMP----N 1037

  Fly  1086 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKA 1150
            |:..|..|.|.|||..||.::|..||...||||:|.|||:.:.::||:|....:.|.|:||....
  Rat  1038 GMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITG 1102

  Fly  1151 EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRN 1215
            ..|.|.:.:|||.|:..|.|||||||||||:||.|||||:|:|||||||.|:||..|||||||..
  Rat  1103 NMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1167

  Fly  1216 EVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTI-------LHQD- 1272
            :|.:.|.:|..||||||...|:.|:.:...|::.|:  ...|||..:|.|..|       |.:| 
  Rat  1168 KVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGL--GSKTGSMSKQELDDILKFGTEELFKDE 1230

  Fly  1273 ------DNEEEEENEV--PDDEMINMMIARSEEEIE------------IFK----RMDAERKKED 1313
                  ||:|.|::.|  .||:.|..::.|:::|.|            .||    .:..|...|:
  Rat  1231 ATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEE 1295

  Fly  1314 EEIHPGRERLI---DESELPDWLTKDDDEVERFHYQYDEDTI---LGRGSRQRKEVDYTDSLTE- 1371
            ||:    ||.|   :||..||:..|    :.|.||:..::.:   ||:|.|.||:|:|.|...| 
  Rat  1296 EEV----EREIIKQEESVDPDYWEK----LLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQED 1352

  Fly  1372 ----------------------------KEWLKAIDD--------GAEFDEEEEEDDSKRKRRKR 1400
                                        .:|.....|        ..|.||:.:|.....:|..|
  Rat  1353 RGVCGRPRPPPTGRSTRAVGPAHLPSLPPDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSR 1417

  Fly  1401 KNRKEESDD-------------DSLILKRRRR------------------------QNLDKRSKK 1428
            |..:.:.|.             :.|....|:|                        ::|..:|:|
  Rat  1418 KGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEK 1482

  Fly  1429 QMHKIMSAVIKH----NQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVD--IKKILQRIEDC---- 1483
            :....:|..::|    ..||   :|.|.....|:.|...:.:.:..|.  |:|.:|..|..    
  Rat  1483 EFKAYVSLFMRHLCEPGADG---AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRW 1544

  Fly  1484 KYADLNELEKDFMQLCQNAQ----------------------------IYNEEASLIYLDSIALQ 1520
            ...:|.|:|:: .::.|...                            |..||.||...:|...:
  Rat  1545 SMPELAEVEEN-KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESTEGE 1608

  Fly  1521 KVFVGARQRIT-------AAADAAAVAAGDNTGEAHGNGGSDNSDNDDDDGGDDGSDDEEIATTS 1578
            |........:|       |.|.|.|...|...|.|..        .:||....:..:.||  ...
  Rat  1609 KEVKPTAPEVTVECAQPPAPAPAPASGPGPTPGPAPA--------PEDDKAPAEPPEGEE--KVE 1663

  Fly  1579 AAAVKMKLKLNKSLASAPATPTQSSSNVSSGAAT---TSKKQTRRKRSQKKYTISDDDDDDMD 1638
            .|.||.:.:......|...|..:.:...|:...|   ...|:.:::..:||..:..:.:...|
  Rat  1664 KAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEKKEVLLQNGETPKD 1726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622
Pro-rich <247..401 CDD:464580 13/48 (27%)
PTZ00121 <477..651 CDD:173412 27/180 (15%)
HSA 501..573 CDD:214727 11/78 (14%)
BRK 650..691 CDD:462196 13/121 (11%)
PLN03142 739..>1368 CDD:215601 260/721 (36%)
Bromo_SNF2L2 1425..1530 CDD:99947 26/142 (18%)
Chd4XP_006237458.1 CHDNT 164..217 CDD:462357
PHD1_CHD_II 372..414 CDD:277006 7/53 (13%)
PHD2_CHD_II 451..493 CDD:277007 5/43 (12%)
CD1_tandem_CHD3-4_like 498..576 CDD:349314 8/77 (10%)
CD2_tandem_CHD3-4_like 619..673 CDD:349309 11/62 (18%)
PLN03142 724..>1281 CDD:215601 229/582 (39%)
DEXHc_CHD4 726..957 CDD:350814 97/244 (40%)
DUF1087 1302..1345 CDD:461922 16/46 (35%)
CHDII_SANT-like 1409..1549 CDD:461920 23/142 (16%)
CHDCT2 1770..1915 CDD:462358
Blue background indicates that the domain is not in the aligned region.

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