DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(3)72Ab and RCK

DIOPT Version :9

Sequence 1:NP_648818.3 Gene:l(3)72Ab / 39737 FlyBaseID:FBgn0263599 Length:2142 Species:Drosophila melanogaster
Sequence 2:NP_001326061.1 Gene:RCK / 822395 AraportID:AT3G27730 Length:1143 Species:Arabidopsis thaliana


Alignment Length:993 Identity:272/993 - (27%)
Similarity:467/993 - (47%) Gaps:128/993 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   461 LQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHI 525
            |:.|..||...:..| .|:..|.:||..:.....||.||::.||||:|||.:..|.::|...|.|
plant     6 LKSVSDLPGNFRSAF-SFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSI 69

  Fly   526 NEDGT-INAQD-FKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQ-LTREQIAATQVIV 587
            :::|: ::|:. .|.:|::|.|:||||.:.::.::...:.::..|||||:: .:.:.|....:|:
plant    70 SKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDADIIL 134

  Fly   588 CTPEKWDIITR---KGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVAR--------TIRNIET 641
            .||||:|.::|   ..|...|.|.:.||:|||:|||:|.||..|||:|:|        .:|:  :
plant   135 TTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRLKILSSNHELRS--S 197

  Fly   642 TQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKK----ALKRFQ 702
            |...|||:.:|||:||.:|:|.:|:| |..|:..|....|||.|..:..|....|    ..||.|
plant   198 TLASVRLLAVSATIPNIEDLAEWLKV-PTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQ 261

  Fly   703 VMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAE 767
               ..:|:..|:::.....|||..:||...:.|:.:....:.......|:| ....:|.||..:.
plant   262 ---NYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIK-SREQLERLREASP 322

  Fly   768 QVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 832
            ...:.:::..:..|...|:.|:.:.||:|||.||.:..|||:.:|.|||.|:|||||||:||.||
plant   323 MCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQ 387

  Fly   833 VYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKL 897
            .:|.|||.::|.....:|||.||||||.:|..|..|::|....:..|.:|||....:|||.:..|
plant   388 HFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCL 452

  Fly   898 PDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLY----GVSHDAIKADPLLEQHRADLLH 958
            .:.|.||||..|:..:..|:.|:..:|||:||.:||..|    |:..|.:      |:|..:|  
plant   453 IEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYAIKKGIPKDRV------EKHLQEL-- 509

  Fly   959 TAACCLER-SGLIKYD---RKTGHF--QVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRV 1017
                ||:: :.|.:|.   ..|..|  :..:.||:.:.|||..||| .|......:.|..|...:
plant   510 ----CLQKINELSQYQMIWTDTDGFVLKPEEPGRLMTKYYLKFETM-KYIINTPTSYSLDEALHI 569

  Fly  1018 FSLSSEFRHISVREEEKLELQKLME----RVPIPI-------KESIEEHSAKVNVLLQAYIS-QL 1070
            ...:.|...|.:|..||..|..:..    |:...|       |:.|:....|:.||...::: ..
plant   570 VCHAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDP 634

  Fly  1071 KLEGFALMSDMVFITQSAARLMRAIFE-IVLTRGWAQLADKTLTLCKMIDRRMWQSMTP--LRQF 1132
            .:...::..|...|..:.:|:.|.:.| .:..:.:......|| |.|.:.:::|.. :|  |:|.
plant   635 SVHDLSMTQDANSICSNGSRIARCMKEYFIYKKNYKGTLSSTL-LAKSLYQKLWDD-SPYLLKQL 697

  Fly  1133 KKMPDEIAKKLEK---KHFPWGRLYDLEPHELGELI--RVPKLGKTIHKFVHQF-PKLELST-HI 1190
            ..:....||.|..   :.|.  .|.:.:|..: |::  |....|.||.:.:... ||:|:.. .:
plant   698 PGIGMVTAKALHSMGVRSFE--ALAEADPRRI-EIVTGRKYPFGNTIKESLSSLPPKVEIKVEEV 759

  Fly  1191 QPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILH-HEFFLLKQKYSQDEHQLKF 1254
            ....:|..::.:|::   :..:.:......:..||...:.|.::| ||      |...::....:
plant   760 DCQKQGISKLAVTLS---RVSQPLQSTKRHYADLIVGSEEENLIHFHE------KIRMEDFSSPY 815

  Fly  1255 FVPVFEPLPPQYF-----LRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQ 1314
            .|.|....|.|..     ..::.:.:||.:..     ..|:|.:.|.                .:
plant   816 SVTVLLERPHQQTKVTVKADLIFEEYIGIDLH-----ETLLLKKANN----------------NK 859

  Fly  1315 PKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTG--SGKMTIAEFAIM--------RLFT 1369
            ..::|  ..|.||:.|   .:.:|....|:|.....|:.  ..|..:..|.::        ..:.
plant   860 VNYKS--ENRMPQYYP---PMASACIADDDNPVTSGPSNRKDKKDDMPSFKLIDDDSEEEKEPYV 919

  Fly  1370 TQSDARCVYLVSEEALAD 1387
            |..:..|| :::|..:.|
plant   920 TMEEDDCV-IINEHTVFD 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)72AbNP_648818.3 BRR2 466..1241 CDD:224125 244/825 (30%)
DEAD 482..661 CDD:278688 70/192 (36%)
HELICc 773..859 CDD:197757 41/85 (48%)
Sec63 982..1285 CDD:280962 66/330 (20%)
DEXDc 1320..1506 CDD:214692 15/78 (19%)
DEAD 1329..1495 CDD:278688 12/69 (17%)
HELICc 1615..1694 CDD:197757
Sec63 1811..2127 CDD:280962
RCKNP_001326061.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D154891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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