DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)72Ab and hfm1

DIOPT Version :9

Sequence 1:NP_648818.3 Gene:l(3)72Ab / 39737 FlyBaseID:FBgn0263599 Length:2142 Species:Drosophila melanogaster
Sequence 2:XP_021322847.1 Gene:hfm1 / 557052 ZFINID:ZDB-GENE-061207-43 Length:1461 Species:Danio rerio


Alignment Length:848 Identity:247/848 - (29%)
Similarity:406/848 - (47%) Gaps:62/848 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly  1316 KFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSD----ARC 1376
            ||.|.:.. ||.||.:|:|..:.|..|::|....|||||||..:.|.||:||....|:    .|.
Zfish   233 KFRSVFKD-FPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVRA 296

  Fly  1377 VYLVSEEALADLVFADWHSKFGSLDIKVVKLTGETG-TDLKLIAKGQLVITTADKWDVLSRRWKQ 1440
            ||:...:||....:.:|..|||.|.:|..:|||:|. .|...|....|:.|||:|||.::||||.
Zfish   297 VYMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRWKD 361

  Fly  1441 RKNVQLVNLFIVDELQLVGGE-EGPVLEIVCSRMR-------YISSQIEKQIRIVALSASLTDAR 1497
            ...:..:.||:|||:.:|..: .|..||:|.|||:       .|:.:.:..:|.||:||::.:.:
Zfish   362 NCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSATIPNIQ 426

  Fly  1498 DVAQWLG--CNPNATFNFHPSVRPIPLELHIQGYNVTHNATRI---ATMSKPVYNAILKYSAHKP 1557
            ||::||.  ..|........|.||:.|...:.|:....|....   .:::..:.|.|..||..||
Zfish   427 DVSEWLSDESGPATCLEMDESHRPVKLRKVVLGFPCGSNQNEFKFDLSLNYKLANIIQTYSDQKP 491

  Fly  1558 VIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHA--EEEDIKPFLERMTDKTLKETLAQGVAYLH 1620
            .:||.|:||..:.:|    :..|.|.   ||..:  .::.:..:...:.|..|::....|:.|.|
Zfish   492 TLVFCSTRKGVQQSA----SVLAKDA---RFIMSIDHKQRLVKYANSLLDAKLRDLFVYGIGYHH 549

  Fly  1621 EGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQ 1685
            .|:..||.::.|..|..|.:.|...:..|..|:::.||||:|..|..|.|  .:.|:|...|:||
Zfish   550 AGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYVG--GACEEYSEADLLQ 612

  Fly  1686 MIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDA 1750
            |||||.||..|..|..|:|.:...||.:..|::....|||.|...:.:|.|||:|..||.:...|
Zfish   613 MIGRAGRPQFDTTATAVIMTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMA 677

  Fly  1751 VDYLTWTFLYRRLTQNPNYYNL-QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNL 1814
            :|::..||||.|..:||.:|.. ..|....:...|.||....|:.|.....|::::|::..|...
Zfish   678 LDWIRSTFLYIRALKNPKHYGFPPEVDKCGIETKLQELCLKNLNSLASFNLITMDEDINIKPTET 742

  Fly  1815 GMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLT 1879
            |.:.|.|.:.:.|::.||:...::| :..|:|:||.|.|:.|:.:|.:|.:.|.||::. .|:.|
Zfish   743 GKLMARYCVAFDTVKQFSMVTGTET-LPELIEMISKAKEFSDMQLRVNERKTLNTLNKD-KNRTT 805

  Fly  1880 --GPNETAPKFNDPHIKTNLLLQAHLSRL---QLGPELQGDTEQILSKAIRLIQACVDVL--SSN 1937
              .|.|...|.||  :|.|.|:||.|..:   :.|  |..||.:|...|:|:.:...:.|  .|.
Zfish   806 IRFPIEGKIKSND--MKVNCLIQAQLGCIPIQEFG--LIQDTGKIFRNAVRVSRYLTEFLCHHSK 866

  Fly  1938 GWLSPAVAAMELAQMVTQAMWSKDSYL-KQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLL 2001
            ...:..:.|:.||:.....:|....|: |||......:........:.|...|.:....:...::
Zfish   867 SNFAAQLNALILAKCFRAKLWENSPYISKQLERIGLSLATALVNAGLTTFSKIEQTSPRELELIV 931

  Fly  2002 QLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVV--VQLEREDEVTGPVIAPFFPQKR 2064
            .........:....::.|..|::.|.:.:   .|.||..:|  |.:....|:.....||      
Zfish   932 NRHPPFGNQIKEAISKLPRCEVSLEQIPR---YSPSTAEIVFTVNMNNFKELALKRTAP------ 987

  Fly  2065 EEGWWV--VIGDPKTNSLLSIK---RLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEY 2124
             :..:|  ::||.....:...|   .|.|:..:..|...|..||...:.:::.:|..|:|.|.:.
Zfish   988 -DHHYVTLIVGDCDNKVVFQQKISDTLLLKSGSWSKRIEVTRSPKGEELSIHLISSEYVGLDIQQ 1051

  Fly  2125 KFS 2127
            .:|
Zfish  1052 DYS 1054

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)72AbNP_648818.3 BRR2 466..1241 CDD:224125
DEAD 482..661 CDD:278688
HELICc 773..859 CDD:197757
Sec63 982..1285 CDD:280962
DEXDc 1320..1506 CDD:214692 73/200 (37%)
DEAD 1329..1495 CDD:278688 66/178 (37%)
HELICc 1615..1694 CDD:197757 31/78 (40%)
Sec63 1811..2127 CDD:280962 77/330 (23%)
hfm1XP_021322847.1 CiPC <36..>205 CDD:318094
BRR2 226..967 CDD:333051 227/752 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D154891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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