DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(3)72Ab and Ddx21

DIOPT Version :9

Sequence 1:NP_648818.3 Gene:l(3)72Ab / 39737 FlyBaseID:FBgn0263599 Length:2142 Species:Drosophila melanogaster
Sequence 2:NP_001032278.1 Gene:Ddx21 / 317399 RGDID:1307306 Length:782 Species:Rattus norvegicus


Alignment Length:711 Identity:143/711 - (20%)
Similarity:272/711 - (38%) Gaps:179/711 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   339 LASAQTDSERQRIREKMRG----------NSALAKILRQLDTGKSEDQEEGEARGSKRGKGDAED 393
            :.:.|..||::..:||.:.          .:|.:|:......|.||| :.|..:..|..|.:.|.
  Rat    20 METLQKPSEKKTRKEKPKSKTDEATEGVEEAASSKVKAVKKKGPSED-DVGPPKSKKAKKQEEEP 83

  Fly   394 GGAAAAGQVAGVRQLLELEEMAFTQGSHFM-----ANKRCQLPDGSYRKQRKGYEE-----VHVP 448
            ....|:......::...||:.|.:..:..|     :.:....|  ..:|.:||.|.     ...|
  Rat    84 QDDPASKSKTSKKKKEPLEKKAPSAKTKEMKAEEPSEEEADAP--KPKKTKKGKEANGDVGEKSP 146

  Fly   449 ALK-----PVPFDAN-----EELQPVDKLPKYVQ-------PVFE---------GFKTLNRIQSR 487
            .||     |.|..::     ||.:...::|...:       |:.|         |...|..||::
  Rat   147 GLKNGLSHPKPDSSSTQAPGEESETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAK 211

  Fly   488 LYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMV 552
            .:.... |.::::..|.||.|||....:.::.::...:.|.....|.  :::.:||.:.|..::.
  Rat   212 TFHHVY-SGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAP--QVLVLAPTRELANQVS 273

  Fly   553 GNFG---RRL--ACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLV 612
            .:|.   ::|  ||: ...:...|..:..|..|   .::|.||.:.....:.|.    :.|.:|.
  Rat   274 KDFSDITKKLSVACF-YGGTPYGGQIERMRSGI---DILVGTPGRIKDHLQNGK----LDLTKLK 330

  Fly   613 IIDEIHLLHDERGPVLEALVARTIRNI------ETTQEEVRLVGLSATLPNYQDVATFLRVKPDK 671
                 |::.||...:|:...|..:..|      :.:::..:.:..|||.|::    .|...|.  
  Rat   331 -----HVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHW----VFNVAKK-- 384

  Fly   672 GLFYFDNSYRPVSL---EQQYIGVT-EKKALK-----RFQVMNEI--VYEKTMEHAGRNQVLVFV 725
               |..::|..|.|   :.|...:| |..|:|     |..|:.::  ||.   .|.||  .::|.
  Rat   385 ---YMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYS---GHQGR--TIIFC 441

  Fly   726 HSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMT 790
            .::|:..:.:   ::.|::||                   |:.:                |..:.
  Rat   442 ETKKDAQELS---QNTCIKQD-------------------AQSL----------------HGDIP 468

  Fly   791 RVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII-----KGTQVYNPEKGRWVELSALDVL 850
            :..|.:....|.:.:..|||:|...|.|:::|...:::     |..:.|....||          
  Rat   469 QKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR---------- 523

  Fly   851 QMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQD 915
              .|||||     .|..|....|.| ::.|:.:.|:..|:.:.|. :|..  .||:..:   .:|
  Rat   524 --TGRAGR-----TGVCICFYQHKE-EYQLAQVEQKAGIKFKRIG-VPSA--TEIIKAS---SKD 574

  Fly   916 AVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKT 976
            |          ||:|.:.....:.|....|:.|:|:..| :...||.....||....|:::
  Rat   575 A----------IRLLDSVPPTAIGHFKQSAEKLIEEKGA-VEALAAALAHISGATSVDQRS 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)72AbNP_648818.3 BRR2 466..1241 CDD:224125 111/554 (20%)
DEAD 482..661 CDD:278688 37/189 (20%)
HELICc 773..859 CDD:197757 18/90 (20%)
Sec63 982..1285 CDD:280962
DEXDc 1320..1506 CDD:214692
DEAD 1329..1495 CDD:278688
HELICc 1615..1694 CDD:197757
Sec63 1811..2127 CDD:280962
Ddx21NP_001032278.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..184 33/166 (20%)
BASP1 7..165 CDD:283191 30/147 (20%)
PRK01297 112..557 CDD:234938 105/532 (20%)
Q motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00552 182..210 5/27 (19%)
DEADc 184..391 CDD:238167 44/231 (19%)
DEAD box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 335..338 2/2 (100%)
HELICc 425..534 CDD:238034 31/168 (18%)
GUCT_RHII_Gualpha_beta 613..705 CDD:240593 3/12 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 704..782
MPLKIP <707..>780 CDD:292140
AdoMet_MTases 716..>765 CDD:302624
3 X 5 AA repeats 720..747
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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