DRSC/TRiP Functional Genomics Resources

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Protein Alignment elgi and Pdzrn3

DIOPT Version :9

Sequence 1:NP_001261904.1 Gene:elgi / 39735 FlyBaseID:FBgn0283649 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_061372.2 Gene:Pdzrn3 / 55983 MGIID:1933157 Length:1063 Species:Mus musculus


Alignment Length:220 Identity:68/220 - (30%)
Similarity:97/220 - (44%) Gaps:37/220 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQPTCPVD-RNSLTTAN 64
            ||::::||.|:||.:|.|.:|..|||||| ...|.|.||.||:..|:.::.:||.. |..|:...
Mouse     1 MGFELDRFDGDVDPDLKCALCHKVLEDPL-TTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKE 64

  Fly    65 LRAV-PRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHLDECIHNP------------------ 110
            |..| |  |:.|:.:|.|.|.:|..||..|:||.....||:.|...|                  
Mouse    65 LNHVLP--LKRLILKLDIKCAHAARGCGRVVKLQDLPEHLERCDFAPARCRHAGCGQLLLRRDVE 127

  Fly   111 --------KRPF-PCEKGCGFDIPKDELK--DHNCVRELRTLIVKQTEKMGELKSELTDQQLTIN 164
                    .||. .|::|||..:...|.:  .|.|.|.||........::|.|...|..:.|...
Mouse   128 AHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGALHKALKKEALRAG 192

  Fly   165 ELKRELQLFKDFMRA-MRVSNPAMR 188
              |||..|......| :.:...|:|
Mouse   193 --KREKSLVAQLAAAQLELQMTALR 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elgiNP_001261904.1 RING 17..55 CDD:238093 16/37 (43%)
Sina 83..>157 CDD:302762 25/102 (25%)
USP8_interact 137..315 CDD:286082 13/53 (25%)
Pdzrn3NP_061372.2 RING 17..57 CDD:238093 17/40 (43%)
Sina 69..>132 CDD:302762 16/64 (25%)
PDZ 246..338 CDD:214570
PDZ_signaling 424..488 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..602
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 746..798
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 834..853
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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