DRSC/TRiP Functional Genomics Resources

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Protein Alignment elgi and Traf3

DIOPT Version :10

Sequence 1:NP_648816.1 Gene:elgi / 39735 FlyBaseID:FBgn0283649 Length:315 Species:Drosophila melanogaster
Sequence 2:XP_038968511.1 Gene:Traf3 / 362788 RGDID:1304633 Length:610 Species:Rattus norvegicus


Alignment Length:241 Identity:61/241 - (25%)
Similarity:94/241 - (39%) Gaps:40/241 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWL-TRQPTCPVDRNSLTTANL 65
            ||. .:|...|:::..|..|..||.:|.| ..|.|.||..|:...| :..|.|...:.|:....:
  Rat    80 GYK-EKFAKTVEDKYKCEKCRLVLCNPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIIKDKV 142

  Fly    66 RAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHL-DECIHNPKRPFPCEKG-CGFDIPKDE 128
            .......|.:|: |.|.|.|...||...|.|.....|| :||   .....||.:. |...:.:.:
  Rat   143 FKDNCCKREILA-LQIYCRNEGRGCVEQLTLGHLLVHLKNEC---QFEELPCLRADCKEKVLRRD 203

  Fly   129 LKDH---NC-VRELRTLIVKQTEKMGEL-KSELTD--------------QQLTINELKRELQ--- 171
            |:||   .| .||......|....|..| |.|.||              |.|..:||...|.   
  Rat   204 LRDHVEKACKYREATCAHCKSQVPMITLQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECV 268

  Fly   172 ------LFKDFMRAMRVSNPAMRA--IADQMERDEVIR-WSSTLPR 208
                  .||.:....:.:|..::|  .:..::...::: ||::|.:
  Rat   269 NAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEK 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elgiNP_648816.1 mRING-HC-C3HC3D_Nrdp1 15..57 CDD:438296 14/42 (33%)
USP8_interact 137..315 CDD:430333 20/99 (20%)
Traf3XP_038968511.1 RING-HC_TRAF3 93..134 CDD:438302 14/41 (34%)
zf-TRAF 178..234 CDD:280357 16/58 (28%)
zf-TRAF 239..289 CDD:280357 8/49 (16%)
Mplasa_alph_rch <300..>410 CDD:275316 3/15 (20%)
MATH_TRAF3 420..605 CDD:239746
Blue background indicates that the domain is not in the aligned region.

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