DRSC/TRiP Functional Genomics Resources

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Protein Alignment elgi and Traf6

DIOPT Version :10

Sequence 1:NP_648816.1 Gene:elgi / 39735 FlyBaseID:FBgn0283649 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001101224.1 Gene:Traf6 / 311245 RGDID:1306853 Length:530 Species:Rattus norvegicus


Alignment Length:334 Identity:64/334 - (19%)
Similarity:104/334 - (31%) Gaps:140/334 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWL-TRQPTCPVDRNSLTTANL 65
            |||| .|...::.:..||||...|.:.:| ..|.|.||:.||.:.: .....||||...|....|
  Rat    55 GYDV-EFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACITKSIRDAGHKCPVDNEILLENQL 117

  Fly    66 RAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSH---------------------------L 103
            .......|.:|| |::.|.|.  ||...::|.....|                           :
  Rat   118 FPDNFAKREILS-LTVKCPNK--GCVQKMELRHLEDHQVHCEFALVICPQCQRFFQKCQINKHII 179

  Fly   104 DEC--------------------IHN------------------------------PKRPFPCE- 117
            ::|                    ||:                              |..|.||. 
  Rat   180 EDCPRRQVSCVNCAVPMPYEEKEIHDQSCPLANIICEYCGTILIREQMPNHYDLDCPTAPVPCTF 244

  Fly   118 --KGCGFDIPKDELKDH---------------------------------NC----------VRE 137
              .||...:.::.|..|                                 .|          |::
  Rat   245 SVFGCHEKMQRNHLARHLQENTQLHMRLLAQAVHNVNLSLRPCDASSPSRGCRPEDPNYEETVKQ 309

  Fly   138 LRTLIVKQTEKMGELKSELTDQQLTINELKRELQLFKDFMRAM-----------RVSNPAMRAIA 191
            |...:|:|..::.||.:::..|.:.::||||.::..:|.:..|           ::.|..|...:
  Rat   310 LEGRLVRQDHQIRELTAKMETQSMHVSELKRTIRSLEDKVAEMEAQQCNGIYIWKIGNFGMHLKS 374

  Fly   192 DQMERDEVI 200
            .:.||..||
  Rat   375 QEEERPVVI 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elgiNP_648816.1 mRING-HC-C3HC3D_Nrdp1 15..57 CDD:438296 15/42 (36%)
USP8_interact 137..315 CDD:430333 18/75 (24%)
Traf6NP_001101224.1 Interaction with TAX1BP1. /evidence=ECO:0000250 1..362 58/311 (19%)
mRING-HC-C3HC3D_TRAF6 67..124 CDD:438305 18/57 (32%)
PLN03086 <132..219 CDD:178635 9/88 (10%)
TRAF6_Z2 157..183 CDD:436235 0/25 (0%)
zf-TRAF 204..261 CDD:280357 8/56 (14%)
MATH_TRAF6 359..508 CDD:239745 6/25 (24%)
Interaction with TANK. /evidence=ECO:0000250|UniProtKB:Q9Y4K3 363..530 6/21 (29%)

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