DRSC/TRiP Functional Genomics Resources

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Protein Alignment elgi and Traf4

DIOPT Version :9

Sequence 1:NP_001261904.1 Gene:elgi / 39735 FlyBaseID:FBgn0283649 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001100487.1 Gene:Traf4 / 303285 RGDID:1306708 Length:470 Species:Rattus norvegicus


Alignment Length:164 Identity:44/164 - (26%)
Similarity:65/164 - (39%) Gaps:31/164 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQP-TCPVDRNSLTTANL 65
            |:|. :|..:....|.||:|...:.:|:|...|.|.||..|:.|:|:... .||.|:..|..|.:
  Rat     3 GFDY-KFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66

  Fly    66 RAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHLDECIHN--------------------- 109
            ...|.:...:|. |:|.|.::..||.....|.....||:.|..|                     
  Rat    67 YPDPELEVQVLG-LAIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVVPCPNRCPAKLSRRDLPAHL 130

  Fly   110 ----PKRPFPCEKGCGFDIPKDELKDHN--CVRE 137
                |||...|| .||.|...:..:.|.  |.:|
  Rat   131 QHDCPKRRLKCE-FCGCDFSGEAYESHEGVCPQE 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elgiNP_001261904.1 RING 17..55 CDD:238093 13/38 (34%)
Sina 83..>157 CDD:302762 19/82 (23%)
USP8_interact 137..315 CDD:286082 1/1 (100%)
Traf4NP_001100487.1 mRING-HC-C3HC3D_TRAF4 15..59 CDD:319555 16/43 (37%)
zf-TRAF 102..156 CDD:280357 12/54 (22%)
zf-TRAF 210..269 CDD:280357
MATH_TRAF4 308..463 CDD:239750
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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