DRSC/TRiP Functional Genomics Resources

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Protein Alignment elgi and PDZRN4

DIOPT Version :9

Sequence 1:NP_001261904.1 Gene:elgi / 39735 FlyBaseID:FBgn0283649 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001158067.1 Gene:PDZRN4 / 29951 HGNCID:30552 Length:1036 Species:Homo sapiens


Alignment Length:131 Identity:44/131 - (33%)
Similarity:63/131 - (48%) Gaps:9/131 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQPTCPVDRNSLTTANL 65
            ||:.:.||...||..|.|.:|..|||:|| ...|.|.||..|:..|..|:..||:....|....|
Human     1 MGFALERFAEAVDPALECKLCGQVLEEPL-CTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGEL 64

  Fly    66 -RAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHLDECIHNPKRPFPCEKGC-----GFDI 124
             |.:|  ||:|:.:|.:.||....||...::|....:|::.|...|.|......||     |.::
Human    65 YRVLP--LRSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPARRLRSRGGCASGLGGGEV 127

  Fly   125 P 125
            |
Human   128 P 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elgiNP_001261904.1 RING 17..55 CDD:238093 15/37 (41%)
Sina 83..>157 CDD:302762 13/48 (27%)
USP8_interact 137..315 CDD:286082
PDZRN4NP_001158067.1 RING 17..54 CDD:238093 15/37 (41%)
Sina 66..>108 CDD:302762 13/43 (30%)
PDZ 221..313 CDD:214570
PDZ_signaling 402..484 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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