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Protein Alignment Pka-C3 and CG4839

DIOPT Version :9

Sequence 1:	NP_730083.2	Gene:	Pka-C3 / 39733	FlyBaseID:	FBgn0000489	Length:	583	Species:	Drosophila melanogaster
Sequence 2:	NP_609349.1	Gene:	CG4839 / 34348	FlyBaseID:	FBgn0032187	Length:	1003	Species:	Drosophila melanogaster

Alignment Length:	353	Identity:	131/353 - (37%)
Similarity:	197/353 - (55%)	Gaps:	37/353 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly   244 ETDDEEDDDESEESS--SVQTAKGVRKYHLDDYQIIKTVGTGTFGRVCLCRDRISEKYCAMKILA 306
            |....:.:|.|..||  |::......:..:.:.:.|.|:|.|.||||.|.  ..:::..|:||:.
  Fly   662 EKPSSQRNDTSGRSSTKSLEFDNEYSQVAISELKKIATLGCGAFGRVDLV--AYNQQALALKIIK 724

  Fly   307 MTEVIRLKQIEHVKNERNILREIRH-PFVISLEWSTKDDSNLYMIFDYVCGGELFTYLRNAGKFT 370
            ..||::..|||||.||:|::.:.|. ||::.|..:.::|..:|.:.:...||:::|.:.....|.
  Fly   725 KIEVVKQDQIEHVYNEKNVMIKCRQSPFIVQLYRTYRNDKYVYFLMEACMGGDVWTVMSKRQYFD 789

  Fly   371 SQTSNFYAAEIVSALEYLHSLQIVYRDLKPENLLINRDGHLKITDFGFAKKLR--DRTWTLCGTP 433
            .:|:.|.|..:|.|.:||||...:|||||||||::..||:.|:.||||||.:|  ::|.|..|||
  Fly   790 EKTAKFIAGCVVEAFDYLHSHHFIYRDLKPENLMLGTDGYCKLVDFGFAKFVRQNEKTNTFAGTP 854

  Fly   434 EYIAPEIIQSKGHNKAVDWWALGVLIYEMLVGYPPFYDEQPFGIYEKILSG--KIEWERHMDPIA 496
            ||:|||||..:||::|||:||||:|:||:|||..||.......||::||||  .|.....:...|
  Fly   855 EYVAPEIILDRGHDRAVDYWALGILVYELLVGKTPFRGVNQIKIYQQILSGIDVIHMPSRIPKSA 919

  Fly   497 KDLIKKLLVNDRTKRLGNMKNGADDVKRHRWFKHLNWNDVYSKKLKPPILPDVHHDGDTKNFDDY 561
            :.|::.|......:|||..:.|..|:|||.||:.|:|..:..|:|..||              ..
  Fly   920 QHLVRHLCKQLPAERLGYQRKGIADIKRHSWFESLDWQRLKLKQLPSPI--------------KR 970

  Fly   562 PEKDWKPAKAVDQRDLQYF------NDF 583
            |.|.|        .|||||      ||:
  Fly   971 PLKSW--------TDLQYFGPSGVENDY 990

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.