DRSC/TRiP Functional Genomics Resources

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Protein Alignment sff and AMPKalpha

DIOPT Version :9

Sequence 1:NP_648814.3 Gene:sff / 39732 FlyBaseID:FBgn0036544 Length:861 Species:Drosophila melanogaster
Sequence 2:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster


Alignment Length:594 Identity:194/594 - (32%)
Similarity:288/594 - (48%) Gaps:118/594 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VGPYRLEKTLGKGQTGLVKLGVHCVIGKKVAIKIINREKL-SESVLMKVEREIAIMKLIDHPHVL 78
            :|.|.|..|||.|..|.||:|.|.:...|||:||:||:|: |..|:.|:.|||..:||..|||::
  Fly    25 IGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHII 89

  Fly    79 GLSDVYENKKYLYLILEHVSGGELFDYLVKKGRLTPKEARKFFRQIISALDFCHSHSICHRDLKP 143
            .|..|......:::|:|:|||||||||:||.|:|...:||:||:||||.:|:||.|.|.||||||
  Fly    90 KLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKP 154

  Fly   144 ENLLLDEKNNIKIADFGMASLQPAGSMLETSCGSPHYACPEVIRGEKYDGRKADVWSCGVILYAL 208
            ||||||...::||||||::::...|..|.||||||:||.||||.|:.|.|.:.|:||||||||||
  Fly   155 ENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYAL 219

  Fly   209 LVGALPFDDDNLRQLLEKVKRGVFHIPHFVPPDCQSLLRGMIEVNPDRRLTLAEINRHPWVTAGG 273
            |.|.|||||:::..|..|:|.|:|.||.::.....:|:..|::|:|.:|..:.||.:|.|     
  Fly   220 LCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEW----- 279

  Fly   274 KGELELELPMMEVVQTHVIPTATAVDPDVLNA-----ICSLGCFKEKEKLIQELLSSSHNTEKVI 333
               .:.:||      .::.|::...|.:|::.     :|:....||.|.....|....|:...:.
  Fly   280 ---FQKDLP------AYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIA 335

  Fly   334 YFLLLERKRRRPALEDDDEIAQKSRSELD----AVDPP--------------RKRLDTCRINGTN 380
            |.|:::.||    ..||   |....:|::    |..||              :..|.|..:.|..
  Fly   336 YHLIIDNKR----FADD---AANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGT 393

  Fly   381 APSYGQISEGSPL---TPRRQAFNFRSYSST---RNHQRR---------SPTTVTSS-------- 422
            :.|.|..:...|:   ||          |||   |.|..|         :.:..||.        
  Fly   394 SASSGTATPVPPVAGGTP----------SSTIPIRPHPERIAPMRDRQLAMSVQTSGGGAFPEKT 448

  Fly   423 ------VRSSSYH----SPTRCNSPMSSAQQQANAIS---RPSSPAAGTRHSTYGDRDR-----S 469
                  ::.:.:|    |.::.|..|....:...|:|   :..:|        |..|.|     :
  Fly   449 ARGGTPIKRAKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINP--------YHVRVRRQNVKT 505

  Fly   470 GHHSSVSRTPSHSSQKSIEGDVVVVREPRIERRDSLRQERGGGSPRDRGDCGIPPGSPGGNSSGS 534
            |..|.:|........||...|...:....:|:.|.:..|            .:.|  |..:.||.
  Fly   506 GKFSKMSLQLYQVDAKSYLLDFKSLTNDEVEQGDDVIME------------SLTP--PPLSVSGV 556

  Fly   535 TSASPSVHH 543
            ....|:.||
  Fly   557 MPLQPTGHH 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sffNP_648814.3 STKc_BRSK1_2 16..269 CDD:270983 129/253 (51%)
S_TKc 18..269 CDD:214567 128/251 (51%)
UBA_BRSK 298..350 CDD:270525 12/56 (21%)
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 130/262 (50%)
UBA_AID_AMPKalpha 297..360 CDD:270521 15/69 (22%)
AMPKA_C 457..580 CDD:213378 26/131 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461630
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24343
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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