DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and GLRA3

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_006520.2 Gene:GLRA3 / 8001 HGNCID:4328 Length:464 Species:Homo sapiens


Alignment Length:394 Identity:120/394 - (30%)
Similarity:197/394 - (50%) Gaps:66/394 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 HYKHYSQSIS-FYAASSVLLMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILD 342
            |.:|:...:| ||...:.||:....|..:.:|.::|.       |:            |..:.||
Human     3 HVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSA-------PM------------SPSDFLD 48

  Fly   343 LLLEK-KRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRG-TLTVNVNVLLLSLASPDESS 405
            .|:.: ..||.|:                         ||:.:| .:.|..|:.:.|..|..|::
Human    49 KLMGRTSGYDARI-------------------------RPNFKGPPVNVTCNIFINSFGSIAETT 88

  Fly   406 LKYEVEFLLNQQWNDPRLQYGNKSHY--DFL----NALHHHDSIWTPDTYFIMH--GDFKDPIIP 462
            :.|.|...|.|:||||||.|   |.|  |.|    :.|   ||||.||.:|...  .:|.: :..
Human    89 MDYRVNIFLRQKWNDPRLAY---SEYPDDSLDLDPSML---DSIWKPDLFFANEKGANFHE-VTT 146

  Fly   463 MHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLR 527
            .:..||||:||.:.|::|..|.|||...|..||.|...|...:||..|....:.:.|: ||..::
Human   147 DNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQ-DEAPVQ 210

  Fly   528 KSPSLTTLNAYLIKNQTTA--CDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFIT 590
            .:..| ||..:|:|.:...  |.::...|.::|::|.....|...||...::||.:::|..|:::
Human   211 VAEGL-TLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVS 274

  Fly   591 FWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 655
            ||:..:|.||||.:|:||:|...|.|:|.|::||.||.:.|:::|..||:.|::::|||:..||:
Human   275 FWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNF 339

  Fly   656 VGRK 659
            |.|:
Human   340 VSRQ 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 70/239 (29%)
Neur_chan_memb 578..>682 CDD:280999 35/82 (43%)
GLRA3NP_006520.2 LIC 12..451 CDD:273305 118/385 (31%)
Strychnine-binding. /evidence=ECO:0000269|PubMed:26416729 235..240 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614790at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
33.020

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