DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and Gabrg3

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_077346.3 Gene:Gabrg3 / 79211 RGDID:621735 Length:467 Species:Rattus norvegicus


Alignment Length:401 Identity:102/401 - (25%)
Similarity:170/401 - (42%) Gaps:100/401 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 ASSVLLMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEIL---------DLLLEK 347
            |:.:||:||..:.....:....|            |.|: |..|:.|.:|         .|:|.|
  Rat     2 AAKLLLLLCLFSGLHARSRRVEE------------DDSE-DSPSNQKWVLAPKSQDTDVTLILNK 53

  Fly   348 --KRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLASPDESSLKYEV 410
              :.|||:|.|.:       |::                 ...::|::.:.|:......:::|::
  Rat    54 LLREYDKKLRPDI-------GIK-----------------PTVIDVDIYVNSIGPVSSINMEYQI 94

  Fly   411 EFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDPIIPMHF------ALRI 469
            :....|.|.|.||::.:......||: :....||.|||.|     ........|:      .|||
  Rat    95 DIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIF-----RNSKTAEAHWITTPNQLLRI 153

  Fly   470 FRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTT 534
            :.:|.|.|.:|..:...||..||.||.|...|..:..|..|.:.::.|.|:              
  Rat   154 WNDGKILYTLRLTINAECQLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWR-------------- 204

  Fly   535 LNAYLIKNQTTACDQNSWR--------------------GNYSCLQVELTFTRDRAYYFTTVFIP 579
                  ||...|.||.|||                    |:|..:.:....:|...|:....:||
  Rat   205 ------KNSVEAADQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIP 263

  Fly   580 GIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIY 644
            .|:.|..|:::||::.:|.|||..:|:||:|...|.|...|.:||.||.:|||:::..||..|::
  Rat   264 CILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVF 328

  Fly   645 ASLLEFVCVNY 655
            |:|:|:..:||
  Rat   329 AALMEYATLNY 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 91/354 (26%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Gabrg3NP_077346.3 LIC 50..464 CDD:455710 89/340 (26%)
LGIC_ECD_GABAAR_G 71..252 CDD:349801 46/206 (22%)
Cys-loop 171..185 CDD:349801 7/13 (54%)
Blue background indicates that the domain is not in the aligned region.

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