Protein Alignment pHCl-1 and gabra6a

DIOPT Version :9

• Sequence 1: NP_001261898.1
• Gene: pHCl-1 / 39730
• FlyBaseID: FBgn0264908
• Length: 978
• Species: Drosophila melanogaster
• Sequence 2: XP_005173169.1
• Gene: gabra6a / 393704
• ZFINID: ZDB-GENE-040426-1692
• Length: 435
• Species: Danio rerio
• Alignment Length: 449
• Identity: 124/449 - (27%)
• Similarity: 186/449 - (41%)
• Gaps: 81/449 - (18%)

  Fly   297 LMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILDLLLEKKRYDKRLLPPVNDE 361
            |:|.:|...|.       |..:.|..|:         |.:...|||.|||  .||.||
Zfish     3 LLLAFLCLTSV-------TNVIGKQKIN---------SENITRILDGLLE--GYDNRL------- 42

  Fly   362 DFCCGLQSPDMATNQNARRPHNRGTLT-VNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQY 425
                              ||.:..::| |..::.:.|.....:.::::.::....|.|.|.||.:
Zfish    43 ------------------RPGSGVSVTEVKTDIFVTSFGPVSDVNMEFTMDMFFRQMWVDERLAF 89

  Fly   426 GNKSHYDFLNALHHHDSIWTPDTYF------IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLI 484
            ........||. ...|.||||||:|      :.| :...|    :...||.:|||:.|.||..:.
Zfish    90 QGPIEILPLNN-RMVDKIWTPDTFFRNARKSLAH-NMTSP----NKLFRIMQNGTVFYTMRLTVS 148

  Fly   485 LSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVW-KNDEDTLRKSPSLTTLNAYLIKNQTTACD 548
            ..|...|..||.|...|.....|.:|...:|.|.| |..|.::...|..::|..|.:..||...:
Zfish   149 AVCPMVLRDFPMDGHTCPLYFGSYAYTNREIVYTWRKGLEASVDFPPESSSLLQYDLLGQTLFTE 213

  Fly   549 QNSW-RGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNF 612
            ...: .|.||...|.....|...|:....:||.|::|..|.::||:...:||||.:.|:||:|..
Zfish   214 TYKFSTGLYSVQVVHFYLQRKLGYHLIQTYIPLIMVVVLSQVSFWINKESVPARTVAGITTVLTM 278

  Fly   613 FTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV--------GRKRPLHNVVYRP 669
            .|.|...||:||.||..|||:.:..||..|:.::|:||..|||.        ..|.|..::|...
Zfish   279 TTLSISARSSLPKVSYATAMDWFIAVCFAFVASALVEFAAVNYYATLEANRENHKLPRGSIVESQ 343

  Fly   670 G-------ENPVTQRLPAVLSRIGVILASPLASAAATPA-MSMMGGATP---MSSGTPA 717
            .       |:|.:........|.|.    |::.|..|.. :.:.|.|.|   |.:||.|
Zfish   344 AQGSDDEPESPQSDTSAYSRKRRGY----PVSEAPRTRVPIFLQGSAFPPNMMLAGTSA 398

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pHCl-1	NP_001261898.1	Neur_chan_LBD	338..566	CDD:280998	62/236 (26%)
		Neur_chan_memb	578..>682	CDD:280999	40/118 (34%)
gabra6a	XP_005173169.1	LIC	2..422	CDD:273305	124/449 (28%)
		Neur_chan_LBD	28..234	CDD:280998	62/238 (26%)
		Neur_chan_memb	242..419	CDD:280999	52/161 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910