DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-36

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001023766.1 Gene:lgc-36 / 3565335 WormBaseID:WBGene00008551 Length:536 Species:Caenorhabditis elegans


Alignment Length:449 Identity:103/449 - (22%)
Similarity:174/449 - (38%) Gaps:82/449 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 NQNARRPHNRGTLT-VNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLN--- 435
            :|:.|...|.|..| |.:::.:.::....:....|.......|:|.|.||.: |.|...|..   
 Worm    74 DQHFRPGFNSGKPTKVYIDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHF-NNSGIGFRQLSL 137

  Fly   436 ALHHHDSIWTPDTYF------IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIF 494
            ::...|.||.|||||      .:||     |...:..:|:..:|||.|:.|..:...||..:..:
 Worm   138 SMAMLDKIWKPDTYFWNGAGSYVHG-----ITTSNRLVRLEPDGTILYSSRITVKAKCQMDMSRY 197

  Fly   495 PFDDPKCSFSMESISYEEAQIKYVW---------KNDEDTLRKSP--SLTTLNAYLIKNQTTACD 548
            |.|...|...:.|.:|...:::|.|         |.|.:::...|  ||:....|...|.|.  |
 Worm   198 PLDKQACRLVIGSYAYSSDEVQYKWRIMGDDNGVKIDYESIADLPQFSLSGFKVYKPANITR--D 260

  Fly   549 QNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFF 613
            :     .||.|:|...|.|...|:....::|..::|...::.|:.:..|...|:.||:|.:|...
 Worm   261 K-----EYSALEVRFYFDRHFGYFLMNFYVPCALVVLLCWVAFFTKREATAERIGIGITNVLTIV 320

  Fly   614 TTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV---- 674
            ..|...:|..|.|.:.||:.|:..:|.......::||..|:|        :..|..|:..:    
 Worm   321 LISMDSKSDSPKVDSPTALEVFIWICYLTHLICMVEFTVVHY--------HTKYNTGDPEIQEVE 377

  Fly   675 TQRLPAVLSRIGVILASPLASAAATPAMSMMGGATPMSSGTPAASS-----SVATPGTPRITDPE 734
            .:||..::.:|    .....:.|..|.......|.|:|...|..:.     ||..|.....|:  
 Worm   378 RERLRQIIKQI----PKNTNNRATEPTFRRRNAALPVSIARPLPNKTKRFMSVRQPKKSEQTE-- 436

  Fly   735 EFFGGGMRWQEAHGGIIGAAVQNLRARSIKRKAARSPSTSISPHPSGRPTEHIYEEPGG 793
                               ::|      :.||.:...||:.:...|....|.|.:|..|
 Worm   437 -------------------SIQ------LMRKISNMESTTHNEVESSLNLESIRQENVG 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 54/211 (26%)
Neur_chan_memb 578..>682 CDD:280999 25/107 (23%)
lgc-36NP_001023766.1 LIC 48..520 CDD:273305 103/449 (23%)
Neur_chan_LBD 63..272 CDD:280998 54/210 (26%)
Neur_chan_memb 284..511 CDD:280999 46/226 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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