DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-28

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001022053.1 Gene:lgc-28 / 3565225 WormBaseID:WBGene00044301 Length:397 Species:Caenorhabditis elegans


Alignment Length:375 Identity:67/375 - (17%)
Similarity:111/375 - (29%) Gaps:155/375 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 LTVNVNVLLLSL--------ASPDESSLKYEVEFLLNQQ-------------------------- 417
            :.::..|.|||:        .||.|...:||.|..|.:.                          
 Worm     1 MDLSTGVALLSMFSLNIQLEPSPGEMEKRYEAETKLREDITKRFDDTMPIKKDGYLQLIPLLHVD 65

  Fly   418 ---------------------WNDPRLQYGNKSHYD----FLNALHH--HDSIWTPDTYFIMHGD 455
                                 |.|.||.: |.|:|.    |....|.  ....|||.   :|..|
 Worm    66 HIHDIQDEQGVLKMALTFTFTWMDERLMW-NPSNYSGIRTFSTTRHEMWRKKFWTPT---LMMTD 126

  Fly   456 F------KDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQ 514
            .      .|...|....:.|..:|.:..:.|..|.:.|:.....:|.|...|:|::.|..|.: |
 Worm   127 VPNSRRPSDVFKPFDMDIYISSSGMVRTSARMMLTIPCRTGFGSYPNDYKNCTFTLMSPYYAD-Q 190

  Fly   515 IKYV-WKNDEDTLRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFI 578
            .::. |...|.|           .||:.::.|           ..|..:|.....|.||   :|:
 Worm   191 FRFAQWGGAEFT-----------RYLMSSRVT-----------DVLDFQLINIDTRNYY---MFL 230

  Fly   579 PGIILVTSSFITF-------WLEWNAVPARV-------MIGVTTMLNFFTTSNGF---------- 619
            ..  .|...|..|       :..:|.|..||       :|...:::..|...:||          
 Worm   231 GS--EVVDDFSKFKPRHCRSFYRYNLVLKRVNKFVSVQLIAPISVIAVFLAISGFLPHFYGLVCA 293

  Fly   620 ---------------------RSTLPVVSNLTAMNVWDGVCMCFIYASLL 648
                                 .|.:|:::          :.:||::|..:
 Worm   294 GSALVYETIFTYDVEQVLPKDYSGMPMIA----------ILLCFLFAETI 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 67/375 (18%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
lgc-28NP_001022053.1 LGIC_ECD 62..>187 CDD:475126 26/128 (20%)
LIC 67..>329 CDD:455710 55/303 (18%)
Blue background indicates that the domain is not in the aligned region.

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