DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and nAChRbeta3

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:321 Identity:67/321 - (20%)
Similarity:123/321 - (38%) Gaps:50/321 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 RPHNRGTLTVNVNV-LLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDS- 442
            :|..:||.| ||:: ::::....||.:.|......||.:|.|.. :....|.||.:..:....| 
  Fly    67 QPVFQGTPT-NVSLEMVVTYIDIDELNGKLTTHCWLNLRWRDEE-RVWQPSQYDNITQITLKSSE 129

  Fly   443 IWTPD-TYFIMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSME 506
            :|||. |.|  :||  :..:.....:.:..:|...:.........|:.::..:|.|...|...:.
  Fly   130 VWTPQITLF--NGD--EGGLMAETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIG 190

  Fly   507 SISYEEAQIKYVWKN---------DEDTLRKSP--SLTTLNAYLIKNQTTACDQNSWRGNYSCLQ 560
            |..     :|.|...         |.|.|.:||  .:....|:.:.           :..|..::
  Fly   191 SWG-----LKVVLPENGTARGESLDHDDLVQSPEWEIVDSRAHFVS-----------QDYYGYME 239

  Fly   561 VELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPV 625
            ..||..|..:.|...::.|...:|..:...|||..:....::||....::........|...|||
  Fly   240 YTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPV 304

  Fly   626 VSNLTAMNV-WDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRI 685
            :||.|.:.| :....:.::..|.:..|.|.|:...:  |.           :|||..|.::
  Fly   305 LSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGK--HK-----------RRLPEALRKL 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 41/199 (21%)
Neur_chan_memb 578..>682 CDD:280999 23/104 (22%)
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 67/321 (21%)
Neur_chan_LBD 52..247 CDD:280998 41/201 (20%)
Neur_chan_memb 255..434 CDD:280999 24/111 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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