DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and nAChRalpha3

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001285015.1 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster


Alignment Length:805 Identity:143/805 - (17%)
Similarity:266/805 - (33%) Gaps:253/805 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 KEILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLASPD 402
            |.:.|.||  ..|:|.:.|.||..|                       .|||.:.:.|..|.   
  Fly    27 KRLYDDLL--SNYNKLVRPVVNVTD-----------------------ALTVRIKLKLSQLI--- 63

  Fly   403 ESSLKYEV---EFLLNQQWNDPRLQYGNKSHYDFLNALH-HHDSIWTPDTYFIMHGDFKDPIIPM 463
            :.:||.::   ...:.|.|.|.:|::..| .|..:..|| ..|.||.||.....:.|       .
  Fly    64 DVNLKNQIMTTNLWVEQSWYDYKLKWEPK-EYGGVEMLHVPSDHIWRPDIVLYNNAD-------G 120

  Fly   464 HFALRIFRNGTITYAMR---RHLIL---SCQGSLHIFPFDDPKCSFSMESISYE--EAQIKYVWK 520
            :|.:.:....|:.|..|   |...:   ||:..:..||||:..|.....|.:|:  :..::::.:
  Fly   121 NFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDE 185

  Fly   521 -NDEDTLRKSPSLT---------TLNAYLIKNQT--TACDQNSWRGNYSCLQVELTFTRDRAYYF 573
             |..:.:.....|:         .|....::|:.  |.||:     .|..:...:|..|...:|.
  Fly   186 LNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDE-----PYLDITFNITMRRKTLFYT 245

  Fly   574 TTVFIP--GIILVTSSFITFWL-----EWNAVPARVMIGVTT-----------------MLNFFT 614
            ..:.||  ||..:|  .:.|:|     |..::...:::.:|.                 :|..|.
  Fly   246 VNLIIPCMGISFLT--ILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFV 308

  Fly   615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGR----KRPLHNVVYRPGENPVT 675
            .......|..:...:..:|:..........|..:..|.:|.:.|    :|||:         |::
  Fly   309 LFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPLY---------PIS 364

  Fly   676 QRL-------------------------PAVLSRIGVILASPLASAAATP--------------- 700
            :.:                         |..|||:.   .||..::.:|.               
  Fly   365 EMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMH---HSPKTTSRSTSPHLQHRVQTYNLMDE 426

  Fly   701 -AMSMMGGATP----MSSGTPAASSSV--ATPGTPRITDPEEFFGGGMRWQEAHGGIIGAAVQNL 758
             .|.|.|||:.    :||..|...|:.  .|..|..:.|.:..    .::|:..|.::...:...
  Fly   427 CGMGMGGGASTITGHLSSLYPPTMSTANQQTSTTSSLIDAQYH----NQYQQTGGSLLDHPLTPT 487

  Fly   759 RARSIKRKAAR-------------------------------SPSTSISPHPSGRPTEHIYEEPG 792
            :.|.:...:::                               |.|.:.||.|     :|.::...
  Fly   488 KFRQMTSTSSQTGQNGSGNGNGNGGYGGHGQSGGHHLYRQQSSCSANFSPLP-----QHAHQAHA 547

  Fly   793 GSTSGVTSTKVKFKDELKEEQPEEAESSTKLRRSVATSTPAL------VVRIEAEIDPEA----- 846
            .:|:          .:|....|...:|:|.: .||||::...      .::|...:...|     
  Fly   548 STTT----------SDLGMANPNVIKSTTTV-NSVATASTLADSCCSGTIQIHQGMGAGAACQSS 601

  Fly   847 ----------EDKPIQDMEMTERQLSLPLKPPRRKASRS--------NSPASVYSDAFENVEATP 893
                      :....|..:..::|.....:|....|:.:        ::.|:..:.|......||
  Fly   602 ELLHHQQLHHQQMHHQQQQQQQQQHHHHQRPTTSAAAAAAAAAAGGPSTSAAAAAAAAAAAAGTP 666

  Fly   894 GEKRQNAGAPNEIVACTTCGGSNSPCTHSANNGCATETC-----------FV--QVRKKEPPHPI 945
            ......||..:.:.||...||.:. |:...|......||           ::  |.||:|....:
  Fly   667 PPPPPPAGVCDILPACQREGGPHC-CSGRGNVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRV 730

  Fly   946 R-----VAKTIDVIARITFPTAYAI 965
            :     ||..:|.:....|..|..:
  Fly   731 KEDWKYVAMVLDRLFLWIFTIAVVV 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 54/251 (22%)
Neur_chan_memb 578..>682 CDD:280999 22/156 (14%)
nAChRalpha3NP_001285015.1 Neur_chan_LBD 26..241 CDD:280998 55/254 (22%)
Neur_chan_memb 248..>359 CDD:280999 17/112 (15%)
Neur_chan_memb <683..760 CDD:280999 15/74 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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