DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and glra1

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:XP_021336638.1 Gene:glra1 / 30676 ZFINID:ZDB-GENE-991117-1 Length:457 Species:Danio rerio


Alignment Length:333 Identity:107/333 - (32%)
Similarity:177/333 - (53%) Gaps:33/333 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   339 EILDLLLEK-KRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRG-TLTVNVNVLLLSLASP 401
            |.||.|:.| ..||.|:.|...|..   |.:|..         .|.:| .:.|..|:.:.|..|.
Zfish    36 EFLDKLMGKVSGYDARIRPNFKDPQ---GSKSDG---------THKKGPPVNVTCNIFINSFGSI 88

  Fly   402 DESSLKYEVEFLLNQQWNDPRLQYGNKSHY--DFL----NALHHHDSIWTPDTYFIMH--GDFKD 458
            .|:::.|.|...|.||||||||.|   |.|  |.|    :.|   ||||.||.:|...  .:|.:
Zfish    89 AETTMDYRVNIFLRQQWNDPRLAY---SEYPDDSLDLDPSML---DSIWKPDLFFANEKGANFHE 147

  Fly   459 PIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDE 523
             :...:..|||.:||.:.|::|..|:|:|...|..||.|...|...:||..|....:.:.| :::
Zfish   148 -VTTDNKLLRISKNGNVLYSIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEW-DEK 210

  Fly   524 DTLRKSPSLTTLNAYLIKNQTTA--CDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTS 586
            ..::.:..| ||..:::|.:...  |.::...|.::|::......|...||...::||.:::|..
Zfish   211 GAVQVADGL-TLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVIL 274

  Fly   587 SFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFV 651
            |:::||:..:|.||||.:|:||:|...|.|:|.|::||.||.:.|:::|..||:.|::::|||:.
Zfish   275 SWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYA 339

  Fly   652 CVNYVGRK 659
            .||::.|:
Zfish   340 AVNFIARQ 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 107/333 (32%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
glra1XP_021336638.1 LIC 7..446 CDD:273305 107/333 (32%)
Blue background indicates that the domain is not in the aligned region.

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