Protein Alignment pHCl-1 and Gabrd

DIOPT Version :9

• Sequence 1: NP_001261898.1
• Gene: pHCl-1 / 39730
• FlyBaseID: FBgn0264908
• Length: 978
• Species: Drosophila melanogaster
• Sequence 2: NP_058985.1
• Gene: Gabrd / 29689
• RGDID: 61901
• Length: 449
• Species: Rattus norvegicus
• Alignment Length: 473
• Identity: 125/473 - (26%)
• Similarity: 204/473 - (43%)
• Gaps: 96/473 - (20%)

  Fly   296 LLMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEI-----LDLLLEKKRYDKRLL 355
            ||:||          ||...||...:.|.       |...|:.||     ||.|:|  .|.:...
  Rat    11 LLLLC----------TQPHHGARAMNDIG-------DYVGSNLEISWLPNLDGLME--GYARNFR 56

  Fly   356 PPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLASPD---ESSLKYEVEFLLNQQ 417
            |         |:..|                 .||| .|.|.:||.|   |::::|.:...|:|.
  Rat    57 P---------GIGGP-----------------PVNV-ALALEVASIDHISEANMEYTMTVFLHQS 94

  Fly   418 WNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGD---FKDPIIPMHFALRIFRNGTITYAM 479
            |.|.||.|.:.:....|:: ...|.:|.||| ||::..   |.|..:. :..:|:..:|.|.|::
  Rat    95 WRDSRLSYNHTNETLGLDS-RFVDKLWLPDT-FIVNAKSAWFHDVTVE-NKLIRLQPDGVILYSI 156

  Fly   480 RRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTL----RKSPSLTTLNAYLI 540
            |....::|...|..:|.|:.:|...:||..|....|.|.|..:::.:    |...:..|:.:|..
  Rat   157 RITSTVACDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQLAQFTITSYRF 221

  Fly   541 KNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIG 605
               ||........|.:..|.:.....|:|..|....::|.::||..|:::||:...||||||.:|
  Rat   222 ---TTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLG 283

  Fly   606 VTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVG--RKRPLHNVVYR 668
            :||:|...|.....||:||..|.:.|::|:..:|..|::|:|:|:...::..  ||:       |
  Rat   284 ITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHFNADYRKK-------R 341

  Fly   669 PGENPVTQRLPAVLSRIGVILASPLASAAATP--AMSMMGGATP-------MSSGTPAASSSVAT 724
            ..:..||:....:..|..::|.| |::|..:.  |:|...|..|       .|....|.....:.
  Rat   342 KAKVKVTKPRAEMDVRNAIVLFS-LSAAGVSQELAISRRQGRVPGNLMGSYRSVEVEAKKEGGSR 405

  Fly   725 PGTPRITDPEEFFGGGMR 742
            ||.|          ||:|
  Rat   406 PGGP----------GGIR 413

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pHCl-1	NP_001261898.1	Neur_chan_LBD	338..566	CDD:280998	60/242 (25%)
		Neur_chan_memb	578..>682	CDD:280999	34/105 (32%)
Gabrd	NP_058985.1	LGIC_ECD	63..246	CDD:355788	50/189 (26%)
		LGIC_TM	249..>337	CDD:365787	30/87 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	1	1.000