DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and HTR3E

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001243543.1 Gene:HTR3E / 285242 HGNCID:24005 Length:482 Species:Homo sapiens


Alignment Length:420 Identity:84/420 - (20%)
Similarity:139/420 - (33%) Gaps:97/420 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 NQNARRPHNRGTLTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHH 439
            |:...||      ..|::|       |.:.::.:.:..:|:..|::|.:.:..:...........
Human    65 NRKPFRP------VTNISV-------PTQVNISFAMSAILDVVWDNPFISWNPEECEGITKMSMA 116

  Fly   440 HDSIWTPDTYFI----------------MHGDFKDPI--------IPMHFALRIFRNGTITYAMR 480
            ..::|.||.:.|                .|.|...|:        .|......:...|.|.|...
Human   117 AKNLWLPDIFIIELCVSRAGQREVPSPGSHRDHSLPLGPLMDVDKTPKGLTAYVSNEGRIRYKKP 181

  Fly   481 RHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQI-----KYVWKNDEDTLRKSPSLTTLNAYLI 540
            ..:...|...:..||||...|:.:..|..|....:     |.||   |.|......|.|...:.:
Human   182 MKVDSICNLDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVW---EITDASRNILQTHGEWEL 243

  Fly   541 KNQTTACDQNSWRGN-YSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWL---EWNAVPAR 601
            ...:.|..:.|..|| |..:...:...|..:.|...:.:|...||....::|:|   ..|.||.:
Human   244 LGLSKATAKLSRGGNLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFK 308

  Fly   602 VMIGVTTMLNFFTTSNGF---RSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLH 663
                :|.:|.:    |.|   .|.|...|....:.|:..:|:..:..||||.:.:.::     ||
Human   309 ----ITLLLGY----NVFLLMMSDLLPTSGTPLIGVYFALCLSLMVGSLLETIFITHL-----LH 360

  Fly   664 NVVYRPGENPVTQRLPAVLSRIGVILASPLASAAATPAMSMMG-GATPMSSGTPAASSSVATPGT 727
            ....:|      ..||..|..:.:...||.......|.....| |.||..              .
Human   361 VATTQP------PPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTH--------------L 405

  Fly   728 PRITDPEEFFG-----------GGMRWQEA 746
            |.:.:||...|           ||..|..|
Human   406 PGVKEPEVSAGQMPGPAEAELTGGSEWTRA 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 40/220 (18%)
Neur_chan_memb 578..>682 CDD:280999 26/109 (24%)
HTR3ENP_001243543.1 Neur_chan_LBD 70..273 CDD:280998 40/218 (18%)
Neur_chan_memb 280..>379 CDD:280999 27/117 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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