DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and Glra1

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:XP_006246440.1 Gene:Glra1 / 25674 RGDID:2704 Length:457 Species:Rattus norvegicus


Alignment Length:387 Identity:114/387 - (29%)
Similarity:191/387 - (49%) Gaps:60/387 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 YS-QSISFYAASSVLLMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILDLLLE 346
            || .::.||...:::..       |.||:.:::.......|:            |..:.||.|:.
  Rat     2 YSFNTLRFYLWETIVFF-------SLAASKEADAARSAPKPM------------SPSDFLDKLMG 47

  Fly   347 K-KRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRG-TLTVNVNVLLLSLASPDESSLKYE 409
            : ..||.|:                         ||:.:| .:.|:.|:.:.|..|..|:::.|.
  Rat    48 RTSGYDARI-------------------------RPNFKGPPVNVSCNIFINSFGSIAETTMDYR 87

  Fly   410 VEFLLNQQWNDPRLQYGNKSHYDFL----NALHHHDSIWTPDTYFIMH-GDFKDPIIPMHFALRI 469
            |...|.||||||||.| |:...|.|    :.|   ||||.||.:|... |.....|...:..|||
  Rat    88 VNIFLRQQWNDPRLAY-NEYPDDSLDLDPSML---DSIWKPDLFFANEKGAHFHEITTDNKLLRI 148

  Fly   470 FRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTT 534
            .|||.:.|::|..|.|:|...|..||.|...|...:||..|....:.:.|: ::..::.:..| |
  Rat   149 SRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQ-EQGAVQVADGL-T 211

  Fly   535 LNAYLIKNQTTA--CDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNA 597
            |..:::|.:...  |.::...|.::|::......|...||...::||.:::|..|:|:||:..:|
  Rat   212 LPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDA 276

  Fly   598 VPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 659
            .||||.:|:||:|...|.|:|.|::||.||.:.|:::|..||:.|::::|||:..||:|.|:
  Rat   277 APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 105/330 (32%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Glra1XP_006246440.1 LIC 7..446 CDD:273305 112/382 (29%)
Blue background indicates that the domain is not in the aligned region.

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