DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and GABRA1

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_000797.2 Gene:GABRA1 / 2554 HGNCID:4075 Length:456 Species:Homo sapiens


Alignment Length:418 Identity:113/418 - (27%)
Similarity:174/418 - (41%) Gaps:66/418 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 DESSSDKEILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLL 396
            |.::....|||.||:  .||.||.|.:.:.                        ...|..::.:.
Human    37 DNTTVFTRILDRLLD--GYDNRLRPGLGER------------------------VTEVKTDIFVT 75

  Fly   397 SLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDPII 461
            |.....:..::|.::....|.|.|.||::........||.| ....||||||:|  |...|....
Human    76 SFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNL-MASKIWTPDTFF--HNGKKSVAH 137

  Fly   462 PM---HFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKND- 522
            .|   :..|||..:||:.|.||..:...|...|..||.|...|.....|.:|..|::.|.|..: 
Human   138 NMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREP 202

  Fly   523 -------EDTLRKSPSLTTLNAYLIKNQT--TACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFI 578
                   ||..|       ||.|.:..||  :...|:| .|.|..:.......|...|:....::
Human   203 ARSVVVAEDGSR-------LNQYDLLGQTVDSGIVQSS-TGEYVVMTTHFHLKRKIGYFVIQTYL 259

  Fly   579 PGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFI 643
            |.|:.|..|.::|||...:||||.:.||||:|...|.|...|::||.|:..|||:.:..||..|:
Human   260 PCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFV 324

  Fly   644 YASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGVILASPLASAAATPAMSMMGGA 708
            :::|:||..|||..::....:     |::.|.::...|        ..||.....|.|.:.....
Human   325 FSALIEFATVNYFTKRGYAWD-----GKSVVPEKPKKV--------KDPLIKKNNTYAPTATSYT 376

  Fly   709 TPMSSGTPAASSSVATPGT--PRITDPE 734
            ..::.|.|.. :::|...|  |:...||
Human   377 PNLARGDPGL-ATIAKSATIEPKEVKPE 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 98/335 (29%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
GABRA1NP_000797.2 LIC 14..442 CDD:455710 113/418 (27%)
LGIC_ECD_GABAAR_A1 56..249 CDD:349835 55/227 (24%)
Cys-loop 166..180 CDD:349835 5/13 (38%)
Blue background indicates that the domain is not in the aligned region.

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