DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and Glra2

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_036700.1 Gene:Glra2 / 24397 RGDID:2705 Length:452 Species:Rattus norvegicus


Alignment Length:436 Identity:127/436 - (29%)
Similarity:200/436 - (45%) Gaps:88/436 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 KHPIHGIDWSKFDESSSDKEILDLLLEK-KRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHN 383
            |||         .::.|..:.||.|:.: ..||.|:                         ||:.
  Rat    36 KHP---------SQTLSPSDFLDKLMGRTSGYDARI-------------------------RPNF 66

  Fly   384 RG-TLTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHY--DFL----NALHHHD 441
            :| .:.|..|:.:.|..|..|:::.|.|...|.|||||.||.|   |.|  |.|    :.|   |
  Rat    67 KGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAY---SEYPDDSLDLDPSML---D 125

  Fly   442 SIWTPDTYFIMH--GDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFS 504
            |||.||.:|...  .:|.| :...:..|||.:||.:.|::|..|.|||...|..||.|...|:..
  Rat   126 SIWKPDLFFANEKGANFHD-VTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQ 189

  Fly   505 MESISYEEAQIKYVWKNDEDTLRKSPSLTTLNAYLIKNQTTA--CDQNSWRGNYSCLQVELTFTR 567
            :||..|....:.:.|.:| ..::.:..| ||..:::|.:...  |.::...|.::|::|:....|
  Rat   190 LESFGYTMNDLIFEWLSD-GPVQVAEGL-TLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLER 252

  Fly   568 DRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 632
            ...||...::||.:::|..|:::||:..:|.||||.:|:||:|...|.|:|.|::||.||.:.|:
  Rat   253 QMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAI 317

  Fly   633 NVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYR--------PGENPVTQRLPAVLSRIGVIL 689
            ::|..||:.|::|:|||:..||:|.|:   |....|        ..|..||:......|..|   
  Rat   318 DIWMAVCLLFVFAALLEYAAVNFVSRQ---HKEFLRLRRRQKRQNKEEDVTRESRFNFSGYG--- 376

  Fly   690 ASPLASAAATPAMSMMGGATPMSSGTPAASSSVATPGTPRITDPEE 735
                           ||....:..||...    |||..|....|::
  Rat   377 ---------------MGHCLQVKDGTAVK----ATPANPLPQPPKD 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 107/334 (32%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Glra2NP_036700.1 LIC 46..441 CDD:273305 123/417 (29%)
Blue background indicates that the domain is not in the aligned region.

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