DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-57

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:343 Identity:92/343 - (26%)
Similarity:158/343 - (46%) Gaps:38/343 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 WSKFDES----SSDKEILDLLLEKKR---YDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRG 385
            |. :||:    ..|.:|.|:....||   |::...|          |...|:||:          
 Worm    24 WD-YDENVTQIEEDFKIDDVTRILKRVGNYNRNAYP----------LLDQDLATH---------- 67

  Fly   386 TLTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYF 450
               |::.:.:..::|....|:.::|:....::|.|.|||:.|.... .:........:|.||.||
 Worm    68 ---VDIQMYIEGMSSFHAQSMDFQVDIYFQEKWVDHRLQHNNTKRI-LVKDPKLFGLLWHPDLYF 128

  Fly   451 --IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEA 513
              .....|.|...| :|.:.|:.|||:.|..|..|.:.|...|..:|.|...|...:.|.:|:|.
 Worm   129 ANARTASFHDVTQP-NFLVWIYPNGTVWYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAYDEE 192

  Fly   514 QIKYVWKNDEDT-LRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVF 577
            |:...|...... :.:...:..::...||..|.. |:.: .|.:|....|....|:..::....:
 Worm   193 QLIIRWNGGNPVEVNRGIRMPDMHLKHIKFYTKR-DKYA-TGIWSSAVAEFHVDREITHHIIQSY 255

  Fly   578 IPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCF 642
            ||..::|..|:.:|||:..|||.||.:.:||:|...|.|:..|..||..|::.|::||.|.||.|
 Worm   256 IPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQSSAARMALPQASDVKAIDVWMGTCMAF 320

  Fly   643 IYASLLEFVCVNYVGRKR 660
            ::::::||..|||..|::
 Worm   321 VFSAMIEFTVVNYCVRRK 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 53/233 (23%)
Neur_chan_memb 578..>682 CDD:280999 34/83 (41%)
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 44/198 (22%)
LIC 44..460 CDD:273305 86/322 (27%)
Neur_chan_memb 255..457 CDD:280999 34/84 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614790at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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