DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-52

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_502839.3 Gene:lgc-52 / 190669 WormBaseID:WBGene00013517 Length:423 Species:Caenorhabditis elegans


Alignment Length:394 Identity:98/394 - (24%)
Similarity:164/394 - (41%) Gaps:66/394 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 EDFCC---------GLQSPDMA----TNQNARRPHNRGTLTVNVNVLLLSLASPDESSLKYEVEF 412
            |||.|         |.::.|:|    ||.:.........:.|.|.:.:..::.....:..:.:::
 Worm    28 EDFTCDDIGLSSLSGAKATDLARILMTNYSRNALPEPAPVKVEVEITIQDISDISAITGTFTIDY 92

  Fly   413 LLNQQWNDPRLQYGNKSHYD--FLNALHHHD---SIWTPDTYFI------MHGDFKDPIIPMHFA 466
            .::..|||.||.:   ||.|  ..|....||   .:|:|:...:      :|...|..|:     
 Worm    93 WISAIWNDKRLAF---SHLDPCRKNLSLDHDMEPKLWSPNVCIVNSKSTKVHDSPKPNIL----- 149

  Fly   467 LRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLRKSPS 531
            |.||.||||....|......||.:|..||.|..:||...||.||..|.::..|      |..||.
 Worm   150 LMIFPNGTIWLNYRIRSEAPCQMNLRNFPLDSIRCSLVFESYSYNAADVELQW------LEWSPV 208

  Fly   532 LTTLNAYLIK----------NQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTS 586
            .|..|.|.:.          :.|.|.....|..    |.|.:.|.|...:|...:::|..|.|..
 Worm   209 STVRNDYNLPDFRMTNITYGSVTEAYTAGMWHR----LSVSIHFERLYGFYILQMYLPTYISVFI 269

  Fly   587 SFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFV 651
            |:|.||::..|:|||:.:.|::::...........:||..|.:.|:::|...|:.||:.||:|..
 Worm   270 SWIAFWMDTKALPARITLSVSSLMALTFQFGNIVKSLPKASYVKAIDIWMFSCVGFIFFSLIELA 334

  Fly   652 CVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGVILASPLASAAATPAMSMMGGATPMSSGTP 716
            .|.|..:   :|:           |||..|...:|.:.::.:....:|...|.:..:...:.|:.
 Worm   335 IVAYNDK---MHD-----------QRLREVRCSVGNLNSNGIGQYNSTTRRSFVELSARRAKGSE 385

  Fly   717 AASS 720
            ..:|
 Worm   386 LGAS 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 88/334 (26%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
lgc-52NP_502839.3 LGIC_ECD_GABAAR 67..250 CDD:349791 52/200 (26%)
Cys-loop 170..184 CDD:349791 6/13 (46%)
LGIC_TM_anion 254..410 CDD:349851 36/150 (24%)
TM1 helix 254..277 CDD:349851 8/22 (36%)
TM2 helix 281..305 CDD:349851 4/23 (17%)
TM3 helix 313..376 CDD:349851 18/76 (24%)
TM4 helix 377..410 CDD:349851 2/13 (15%)
Blue background indicates that the domain is not in the aligned region.

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