DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-45

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001335538.1 Gene:lgc-45 / 189345 WormBaseID:WBGene00021146 Length:1046 Species:Caenorhabditis elegans


Alignment Length:682 Identity:144/682 - (21%)
Similarity:257/682 - (37%) Gaps:137/682 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 NYQQNHKTQTETQTEVAAVVAIATDAGAETETE-------TEAEAQKEPATGPEHLKAAAQVLLT 115
            ::.|:|:|.....||.......|..|..|...:       :.....:||.|..|......:.:..
 Worm   361 HHHQHHQTPPAPSTETPETPTTAQQADYEINDDEYDNRVFSSGLPPEEPTTTTEPTTTTTESISE 425

  Fly   116 IR-----------QARQENNKHSSSQVAETHKDEGEDALARQGSIVDTAAGRIGIDIAATTIQVA 169
            :.           ..::...:|   ||.....:.|||.|                |.:..:|..|
 Worm   426 VEVYDDDVWDYRDMEKRFKVRH---QVVFDGNEIGEDEL----------------DGSFPSIHQA 471

  Fly   170 ERHEDGQH-WQQHNVRRRRRQPDPAAHPASITKLSA---ISLHFHA---------LAALAKTLQK 221
            ...:..:| ..:..:|||||:...|.......|.|:   |.:|..:         :..:.||...
 Worm   472 SNRKRRRHVVLKTKIRRRRRRKRAAGSDEEDEKKSSETVIDVHQDSGENDEDWLNVRQVIKTTDG 536

  Fly   222 HEDLSPVQDRQPLA------YRAWQEHPYAETQMPATM--SAAIIANVGATAAATSAAAFQYLGQ 278
            ...::.:::|..|.      .|||.|...::...|..:  |...:|.:|....||:...|:.:|.
 Worm   537 ETTVAIIEERSHLLDGNSTDVRAWIEIDASDLINPTLLISSPEAVAALGLEVEATAFQRFENVGL 601

  Fly   279 HYKHYSQSISFYAASSVLLMLC--YLTTASTAAATQSETGALDKHPIHGID-----------WSK 330
            :                |..:|  |:..|.....:.|..|...:.|| |::           .|.
 Worm   602 Y----------------LPGICSEYVPKAIDEFNSSSFEGIEIEGPI-GVNITALELAGVNLTSL 649

  Fly   331 FDESSSDKEILDLLLEKKRYDKRL-----LPPVNDEDFCCGLQSPDMATNQNARRPHNR------ 384
            .|:..:|.|:.::|.......|.|     ||                ..|:|...|.:.      
 Worm   650 ADKLRNDTEVDEILSRTNGSTKNLGGSFILP----------------VLNKNQYDPFSAPIVFQG 698

  Fly   385 GTLTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHD---SIWTP 446
            ..:.|...:.:.|:::...|::.|:::..|...|.|.||    .:.||....:...|   .||.|
 Worm   699 SAVVVRFGIYIESMSNFQTSTMDYDMDIYLMMSWRDARL----VNPYDKPILVKEEDILEKIWRP 759

  Fly   447 DTYF--IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESIS 509
            |.:|  ....:|.: :..::|.:|||.:|.:.|..|..:..||...|..:|.|...|...::|.:
 Worm   760 DPFFANAKEAEFHE-VTFLNFLMRIFPDGLVLYETRVKIKPSCNLILCKYPHDKQTCDLLIKSFA 823

  Fly   510 YEEAQIKYVW-KNDEDTLRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYF 573
            |....:::.| ...:|.:.|:|.:.....|:.:.:||.|......|.:|||:......||..::.
 Worm   824 YPVETVRFEWFTRRKDAIDKNPDVKLPELYIDRYETTTCPNERKSGAFSCLRAVFRLKRDVGFHI 888

  Fly   574 TTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGV 638
            ...:||..:.:..|::..||....:..|:.:.:|.:|...|.|.|.|..||.||.|.|:::|.|.
 Worm   889 AQTYIPTSLALMFSWVGVWLPEEFMEGRIGVAITVLLTLSTESAGAREHLPSVSYLKAIDLWFGF 953

  Fly   639 CMCFIYASLLEFVCV-----------NYVGRK 659
            ...|::.:||:.:.|           .:.|||
 Worm   954 ITGFVFFTLLQTLFVIGFDKRANQLKKWAGRK 985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 54/244 (22%)
Neur_chan_memb 578..>682 CDD:280999 27/93 (29%)
lgc-45NP_001335538.1 Neur_chan_LBD 687..>969 CDD:332142 71/286 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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