DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-50

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_498637.3 Gene:lgc-50 / 188633 WormBaseID:WBGene00020605 Length:491 Species:Caenorhabditis elegans


Alignment Length:441 Identity:97/441 - (21%)
Similarity:173/441 - (39%) Gaps:125/441 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   339 EILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLASPDE 403
            :::|.||..  ||..|||....                          :.|.:.:.:..::...|
 Worm    34 KLIDTLLTD--YDTHLLPEAEG--------------------------VNVTIELHVQGVSGISE 70

  Fly   404 SSLKYEVEFLLNQQWNDPRLQYGN----------KSHYDFLNALHHHDSIWTPDTYFI------M 452
            .:..:.::.:.::.|.||||.:.:          ||  ||      ...||||||..|      :
 Worm    71 ITGDFSLDVMYSEIWQDPRLSFKHLNVCATNITLKS--DF------RKKIWTPDTCIINSKSSSI 127

  Fly   453 HGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKY 517
            |....:....:     ::.||.:....|.::...|..:|.:||||...|...:||.|:...:::.
 Worm   128 HSSPSENTFVI-----LYENGLVWSNFRLNVKTPCSVNLKMFPFDSLSCEIVLESYSFNTDEVRL 187

  Fly   518 VWKNDEDTLRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQ----------VELTFTRDRAYY 572
            :|.:...|:.:...|...            |...|..::..|:          |:.||.|...:|
 Worm   188 MWHDVPITMMEKVELPDF------------DLIGWSTDHQRLEYPNGIWDRAKVKFTFARRYGFY 240

  Fly   573 FTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNF-FTTSNGFRSTLPVVSNLTAMNVWD 636
            ....:.|..:.|.||::.|:.:..:|.||:.:||:::|.. |...|..|. ||.||.:..::||.
 Worm   241 LFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRH-LPRVSYIKCLDVWM 304

  Fly   637 GVCMCFIYASLLE--FVC-VNYVGRKRPLHNVVYRPGENPV----------------------TQ 676
            ...:.||:.:|:|  .|| :|...|:|.:.:.|.....|.:                      .:
 Worm   305 IFSVIFIFCTLVELAIVCQLNRWERERQIGSKVLGHWLNQIRKTRKKESKADEGGGGGVGGLLRK 369

  Fly   677 RLPAVLSRIGVILASPLASAAATPAMSMMGGATPMSSGTPAASSSVATPGT 727
            |:| ||:::         .||||.:.|  |.||.|       ::::..|.|
 Worm   370 RIP-VLAQL---------KAAATDSNS--GAATAM-------TTAIQPPNT 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 80/352 (23%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
lgc-50NP_498637.3 LIC 34..483 CDD:455710 97/441 (22%)
LGIC_ECD_GABAAR 54..236 CDD:349791 41/206 (20%)
Cys-loop 157..171 CDD:349791 6/13 (46%)
Blue background indicates that the domain is not in the aligned region.

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