DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-55

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_507870.2 Gene:lgc-55 / 180312 WormBaseID:WBGene00013746 Length:538 Species:Caenorhabditis elegans


Alignment Length:343 Identity:77/343 - (22%)
Similarity:149/343 - (43%) Gaps:54/343 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 ESSSDKEILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLS 397
            |.::.:.:.:||   .:||:.|:|.:...|                          |:|.:|:..
 Worm    85 EKAATRILTELL---SKYDRNLVPKMKGVD--------------------------VDVELLIQR 120

  Fly   398 LASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLN--ALHHH--DSIWTPDTYFI------M 452
            ::...|......:..|.:|.|:||.|.:.::.....|.  :|.|.  |:||.|:...:      :
 Worm   121 VSEISEIQSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVNSKGSAI 185

  Fly   453 HGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKY 517
            |   |.| .|..| |.||.|||:....|..:...|:.....||.|...|:...||.::...:::.
 Worm   186 H---KSP-TPNIF-LAIFPNGTVWMNYRVVVESPCEMDFSFFPMDRVMCTTIFESYAFNVGKVRL 245

  Fly   518 VWKNDEDTLR-----KSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVF 577
            .||.....:.     |.|.. .:..::.:..|.......|    ..|.::|.|.|...:|...::
 Worm   246 HWKRQGQPVEFIDDVKLPDF-HMTKFVHEKATFIYPAGVW----DQLNIKLLFRRSYGFYILQIY 305

  Fly   578 IPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCF 642
            :|...:|..|:|:|||:..::||||.:||::::......:....:||.||.:..::::...|:.:
 Worm   306 LPTYCMVLISWISFWLDRRSLPARVTLGVSSLMALTLQYSNVSRSLPKVSYVKGLDLFMFGCIVY 370

  Fly   643 IYASLLEFVCVNYVGRKR 660
            |:.|::|...|..:.:::
 Worm   371 IFLSIVELAVVGSLEQRK 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 76/337 (23%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
lgc-55NP_507870.2 LIC 90..532 CDD:455710 76/338 (22%)
LGIC_ECD_GABAAR 110..296 CDD:349791 46/221 (21%)
Cys-loop 215..229 CDD:349791 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.

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