DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pHCl-1 and avr-15

DIOPT Version :9

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001024076.1 Gene:avr-15 / 179834 WormBaseID:WBGene00000233 Length:657 Species:Caenorhabditis elegans


Alignment Length:611 Identity:161/611 - (26%)
Similarity:260/611 - (42%) Gaps:153/611 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 ENNKHS--SSQVAETHKD------EGEDALARQGSIVDTAAGRIGIDIAATTIQVAERH------ 172
            |||..|  :.:..|.:||      ||:.....:|:  |||||    |:..|:....|:|      
 Worm    69 ENNDTSRETRESYEEYKDDIDHLLEGDLTFYDEGA--DTAAG----DVVITSETPVEKHKEVHFK 127

  Fly   173 ------------------EDGQHWQQHNVRRRRRQPDP-AAHPASITKLSAISLHFHALAALAKT 218
                              |:|::.:::.......:..| ...||:.|           :...|:|
 Worm   128 NEPEEEEIGKEDDGGGEAEEGEYEEENGSDAEEEEESPEKVEPATST-----------ITTEAQT 181

  Fly   219 LQKHEDLSP-----VQDRQPLAYRAWQEHPYAETQMPATMSAAIIANVGATAAATSAAAFQYLGQ 278
            ....|:::.     ::|.:       ...|.:|...|             ..||:|:..|:...|
 Worm   182 TTTPEEVTQDVSDNIEDDE-------DARPKSEEHSP-------------KHAASSSDLFEDDDQ 226

  Fly   279 HYKHYSQSISFYAASSVLLMLCYLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILDL 343
                          |:.|..:..|:..:.....|.:|                    ||.|||:.
 Worm   227 --------------STTLESIARLSAPAHVPIEQPQT--------------------SDTEILEH 257

  Fly   344 LLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLASPDESSLKY 408
            || .:.||.|:.||..|...                   :.|.:.|:||:||.|::..|..:::|
 Worm   258 LL-TRGYDHRVRPPGEDGTI-------------------HGGPVVVSVNMLLRSISKIDNVNMEY 302

  Fly   409 EVEFLLNQQWNDPRLQYGNK--SHYDFLNALHHHDSIWTPDTYFIMHGD-FKDPIIPMHFALRIF 470
            .|:....:.|.|.||.:|.|  :..||| .|.....||.||::|..... :|..|...:..:|:.
 Worm   303 SVQLTFRESWVDKRLSFGVKGDAQPDFL-ILTAGQEIWMPDSFFQNEKQAYKHMIDKPNVLIRVH 366

  Fly   471 RNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTTL 535
            ::|||.|::|..|:|||...|..:|.|..:|...:.|.:|....|:||||.:.....|:...::|
 Worm   367 KDGTILYSVRISLVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSSSL 431

  Fly   536 NAYLIKN-QTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVP 599
            .::.:.| .||.|...:..|:||||:..:...|..:||...::||..:||..|:::||::..|||
 Worm   432 PSFQLTNTSTTYCTSKTNTGSYSCLRTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 496

  Fly   600 ARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPL-- 662
            |||.:||||:|...|.|:|..:.||.|:.:.|::||.|.||.||:.:||||..|.|:..|:..  
 Worm   497 ARVTLGVTTLLTMTTQSSGINAKLPPVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANK 561

  Fly   663 -----------------HNVVYRPGE 671
                             ||.|:.|.|
 Worm   562 RARTEREKAELPFLQNSHNDVWVPRE 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 70/231 (30%)
Neur_chan_memb 578..>682 CDD:280999 44/113 (39%)
avr-15NP_001024076.1 LIC 253..648 CDD:273305 117/356 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614790at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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