DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and lgc-44

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_505954.2 Gene:lgc-44 / 179600 WormBaseID:WBGene00009790 Length:618 Species:Caenorhabditis elegans


Alignment Length:343 Identity:87/343 - (25%)
Similarity:154/343 - (44%) Gaps:53/343 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 GIDWSKFDESSSDKEILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTV 389
            |:|:.:...||:   ||. .|.|..||.|..|.::.:|                       |:||
 Worm   238 GLDYQRPLPSST---ILP-FLRKMEYDARQPPSLHVDD-----------------------TVTV 275

  Fly   390 NVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNK-----SHYDFLNALHHHDSIWTPDTY 449
            .|.:.:.|:::.:.|::.|:::..:...|.||||::...     :.|.||..:...|.|:|...|
 Worm   276 KVGIAVQSMSNFELSTMDYDLDAWVRMSWIDPRLRHDLSRPILVNDYTFLKMIWRPDPIFTNSKY 340

  Fly   450 FIMHGDFKDPIIPMHFALRIFRNGTITYAMRRHL------ILSCQGSLHIFPFDDPKCSFSMESI 508
            ...|     .:..::|.|.||.:|.|...||.:|      |:.|:     :|.|:|..|..:.|:
 Worm   341 STFH-----KVTYLNFYLFIFPDGKIFMDMRVYLKPTAAQIVLCK-----YPHDNPAVSLKISSM 395

  Fly   509 SYEEAQIKYVW---KNDEDTLRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRA 570
            .:.:..:|..|   .||...:.|:..:..|:...:...|  |:.....|.||||:.:....|:..
 Worm   396 GFTQDVVKLEWFSDTNDAIWIEKNVKIPELSIRHLHPDT--CNGVRKSGVYSCLEAKFYMHREVG 458

  Fly   571 YYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVW 635
            |:....:||..|.|..|:|:.||....|..|:.:.:|..|.....:|..:..||.||.:.|:::|
 Worm   459 YHIANTYIPTAICVVFSWISVWLPEEFVEGRIFVSLTVFLTLSAENNSAKEELPKVSYVKAIDIW 523

  Fly   636 DGVCMCFIYASLLEFVCV 653
            .|....|::.::|:.:.|
 Worm   524 FGFTSTFVFLTMLQALVV 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 83/329 (25%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
lgc-44NP_505954.2 LGIC_ECD_anion 273..456 CDD:349788 48/194 (25%)
Cys-loop 374..388 CDD:349788 5/18 (28%)
LGIC_TM_anion 459..603 CDD:349851 24/83 (29%)
TM1 helix 459..482 CDD:349851 8/22 (36%)
TM2 helix 486..510 CDD:349851 5/23 (22%)
TM3 helix 518..579 CDD:349851 6/24 (25%)
TM4 helix 580..603 CDD:349851
Blue background indicates that the domain is not in the aligned region.

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