DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and acc-4

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001407497.1 Gene:acc-4 / 176778 WormBaseID:WBGene00012099 Length:409 Species:Caenorhabditis elegans


Alignment Length:353 Identity:86/353 - (24%)
Similarity:149/353 - (42%) Gaps:68/353 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 LLPPVNDEDFCCGLQSPDMATNQNARRPHNR-------------------------GTLTVNVNV 393
            ||..:.|:...|....|..|.|.:.  ||..                         |.:.|::.:
 Worm    18 LLRSLEDDSNECMFNCPKRARNVSV--PHTEKTCMGDDAIIAQILDGYNKLDLPGGGHVVVSIEI 80

  Fly   394 LLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHH---------DSIWTPDTY 449
            .:..::...|.:.::|::..:.::|.||.|.|   ||   ||....:         :.||.|...
 Worm    81 WVQEVSKIIEITSEFELDIYVTERWTDPSLAY---SH---LNPCKSNMSVDGATILNKIWNPHAC 139

  Fly   450 FI------MH-GDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMES 507
            |:      :| ..||      :..|:|:.||:|.:..|..|...|..:|..||.|..:|....||
 Worm   140 FVNSKLANIHESPFK------NIFLQIYSNGSIWHNYRIKLTGPCSSTLRTFPIDQQRCMLFYES 198

  Fly   508 ISYEEAQIKYVWKNDEDTLRKSPSLT------TLNAYLIKNQTTACDQNSW-RGNYSCLQVELTF 565
            .::...|:|..|      :...|.:|      ||..|::.:.:::.:...: .|.::.|....||
 Worm   199 FTHNTDQVKMEW------ITTVPPITILKGNITLPDYVLVDFSSSSELRLYPPGIFNELIATFTF 257

  Fly   566 TRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLT 630
            .|...:|...|::|..|.|..|:::|.|....:|:|..:||.::|..........:.||..|::.
 Worm   258 QRLYGFYILQVYVPAYISVFISWVSFTLGAEQIPSRTTVGVNSLLALTFQFGAVVNNLPKTSDVK 322

  Fly   631 AMNVWDGVCMCFIYASLLEFVCVNYVGR 658
            |::||....|.||:|||:|...|.|:.|
 Worm   323 AIDVWILSSMAFIFASLIELAVVGYLSR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 86/353 (24%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
acc-4NP_001407497.1 LGIC_ECD_GABAAR 74..259 CDD:349791 46/202 (23%)
Cys-loop 178..192 CDD:349791 5/13 (38%)
LGIC_TM_anion 263..396 CDD:349851 29/88 (33%)
TM1 helix 263..286 CDD:349851 7/22 (32%)
TM2 helix 290..314 CDD:349851 5/23 (22%)
TM3 helix 322..348 CDD:349851 11/25 (44%)
TM4 helix 349..396 CDD:349851 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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