DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and avr-14

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_001020963.1 Gene:avr-14 / 172270 WormBaseID:WBGene00000232 Length:430 Species:Caenorhabditis elegans


Alignment Length:453 Identity:140/453 - (30%)
Similarity:208/453 - (45%) Gaps:92/453 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 IHGIDWSKFDESSSDKEILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTL 387
            ||.|   :......::||:..:|  |.||.|:.|                 ...||..|...|.:
 Worm    16 IHSI---RAKRKLKEQEIIQRIL--KDYDWRVRP-----------------RGMNATWPDTGGPV 58

  Fly   388 TVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQY------GNKSHYDFL------NALHHH 440
            .|.||:.|.|::..|:.:::|..:|...::|.|.||.|      |:.....|:      || ...
 Worm    59 LVTVNIYLRSISKIDDVNMEYSAQFTFREEWTDQRLAYERYEESGDTEVPPFVVLATSENA-DQS 122

  Fly   441 DSIWTPDTYFIMHGDFKDPIIPM-HFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFS 504
            ..||.|||:|....:.:..:|.. :..:||.:||.|.|::|..|:|||..||..:|.|...|...
 Worm   123 QQIWMPDTFFQNEKEARRHLIDKPNVLIRIHKNGQILYSVRLSLVLSCPMSLEFYPLDRQNCLID 187

  Fly   505 MESISYEEAQIKYVWK-----NDEDTLRKS-PSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVEL 563
            :.|.:|....|||.||     ..:|.||:| ||....:..     |..|...:..|.|||.:|.|
 Worm   188 LASYAYTTQDIKYEWKEKKPIQQKDGLRQSLPSFELQDVV-----TDYCTSLTNTGEYSCARVVL 247

  Fly   564 TFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN 628
            ...|:.:||...::||.|:||..|:::|||:.:||||||.:||||:|...|.::|..|.||.||.
 Worm   248 RLRREYSYYLIQLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQASGINSKLPPVSY 312

  Fly   629 LTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYR---------PGENP----------V 674
            :.|::||.|||:.||:.:|||:..|||.|||..|.....:         |.:.|          .
 Worm   313 IKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEFLRKEKKKKTRIDDCVCPSDRPPLRLDLSAYRS 377

  Fly   675 TQRLPAVLSRIGVILASPLASAAATPAMSMMGGATPMSSGTPAASSSVATPGTPRITDPEEFF 737
            .:||| ::.||..||::.:..:.....||                         |:|.|..||
 Worm   378 VKRLP-IIKRISEILSTNIDISRRVDLMS-------------------------RLTFPLTFF 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 120/341 (35%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
avr-14NP_001020963.1 LIC 20..424 CDD:273305 137/446 (31%)
Blue background indicates that the domain is not in the aligned region.

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