DRSC/TRiP Functional Genomics Resources

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Protein Alignment pHCl-1 and Gabrg1

DIOPT Version :10

Sequence 1:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster
Sequence 2:NP_034382.2 Gene:Gabrg1 / 14405 MGIID:103156 Length:465 Species:Mus musculus


Alignment Length:359 Identity:96/359 - (26%)
Similarity:167/359 - (46%) Gaps:57/359 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 ESSSDKEILDLLLEKKRYDKRLLPPVNDEDFCCGLQS----------PDMATNQNARRPHNRGTL 387
            :.:.|::..||.:.|...   |.|.:::.|....|.|          ||:..     ||     .
Mouse    37 DKADDEDDEDLTMNKTWV---LAPKIHEGDITQILNSLLQGYDNKLRPDIGV-----RP-----T 88

  Fly   388 TVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIM 452
            .:..:|.:.|:...|..:::|.::.:..|.|.|.||::.:......||: :....||.|||:| .
Mouse    89 VIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFNSTMKVLMLNS-NMVGKIWIPDTFF-R 151

  Fly   453 HGDFKDP--IIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQI 515
            :....|.  |...:..|||:.:|.:.|.:|..:...|...||.||.|:..|.....|..|.:.:|
Mouse   152 NSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYPKNEI 216

  Fly   516 KYVWKNDEDTLRKSPSLTTLN---------AYL-IKNQTTACDQNSWRGNYSCLQVELTFTRDRA 570
            :|.|        |.||:...:         |:: ::|.|..  .::..|:|..:.:....:|...
Mouse   217 EYKW--------KKPSVEVADPKYWRLYQFAFVGLRNSTEI--SHTISGDYIIMTIFFDLSRRMG 271

  Fly   571 YYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVW 635
            |:....:||.|:.|..|:::||:..:|||||..:|:||:|...|.|...|.:||.||.:|||:::
Mouse   272 YFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLF 336

  Fly   636 DGVCMCFIYASLLEFVCVNYV----------GRK 659
            ..||..|::|:|:|:..::|.          |||
Mouse   337 VSVCFIFVFAALMEYGTLHYFTSNNKGKTTRGRK 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 95/353 (27%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Gabrg1NP_034382.2 LIC 66..462 CDD:455710 89/327 (27%)
LGIC_ECD_GABAAR_G 88..269 CDD:349801 45/192 (23%)
Cys-loop 188..202 CDD:349801 6/13 (46%)
Blue background indicates that the domain is not in the aligned region.

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