DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant8 and Galnt13

DIOPT Version :9

Sequence 1:NP_648800.1 Gene:Pgant8 / 39715 FlyBaseID:FBgn0036529 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_017447163.1 Gene:Galnt13 / 311039 RGDID:735044 Length:571 Species:Rattus norvegicus


Alignment Length:572 Identity:191/572 - (33%)
Similarity:282/572 - (49%) Gaps:88/572 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 ESEVIPDLGA-LGRPARGNWTEEQLEAIAKSQRE--------TGYNAWLSKRISPERSLYDMRHR 115
            |..::|.|.| :.|...|.....:...|.|..:|        ..:|...|..|:..|||.|:|..
  Rat    39 ERSLLPALRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLE 103

  Fly   116 SCKKLKYPMEKLPSVSVVITYHNEEASVLLRTLSSLRSRTPIQLLREVILVDDGSTQADEKLNDF 180
            .||...|| ::||:.||||.:|||..|.||||:.|:.:|:|..||.|||||||.|.:      ||
  Rat   104 GCKTKVYP-DELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASER------DF 161

  Fly   181 IKIKFLNMVQHRRITTQV-------GLMHARVVGAELALADVLVFLDSHVEVTKGWLEPLIAPIL 238
            :|:...|.|:...:..::       ||:.||:.||..:...|:.|||:|.|.|.||||||:|.|.
  Rat   162 LKLTLENYVKTLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLARIK 226

  Fly   239 EDNRTCTTPIIDTIDFDNFAYRRGKP-SRGFFNWEFNYIQLPLLKEEAVAMPA----PHKNPIMN 298
            ||.:|...||||.|..|.|.|..|.. :.|.|||:.|:...|:.:.|......    |.:.|.|.
  Rat   227 EDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMA 291

  Fly   299 GGLFAIGREWFSELGGYDKGLKIWGAEQFELSLKLWLCGGQILEVPCSRVGHLFRDGNFQIRYTN 363
            ||||:|.|.:|.|:|.||.|:.|||.|..|:|.::|.|||.:..|.||.|||:||...   .||.
  Rat   292 GGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKAT---PYTF 353

  Fly   364 KDKNSEKKLISRNYRRVAEIWLDEYKDKLFANMPHLTVIPVGNLAEQRDLKNRLHCKPFKWFLDN 428
            ......  :|::|.||:||:|:||:||..:...|.:..:..|:::.::.|:..|.||||.|:|: 
  Rat   354 PGGTGH--VINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLE- 415

  Fly   429 LATDFLNLYPILD-PAEYAS-GVLQSISSPKLCLD---RKDPS-------HGQPKLAPCSSDHVF 481
                  |:||... |..|.| |.::::.:.: |||   ||:..       ||.            
  Rat   416 ------NIYPDSQIPRRYYSLGEIRNVETNQ-CLDNMGRKENEKVGIFNCHGM------------ 461

  Fly   482 PSPEQYWSLTNHRELRSGFYCLEVRNHGVNVHIYQCHGQSGNQFWSFDSKTHQVISGQQQNFRHC 546
             ...|.:|.|..:|:|:...||:|......|.:.:||...|||.|.:|::||.::....|:   |
  Rat   462 -GGNQVFSYTADKEIRTDDLCLDVSRLSGPVIMLKCHHMRGNQLWEYDAETHTLVHIITQS---C 522

  Fly   547 LEAQPELNAVTSSVCDPKNH----------KQQWKF-GYLNSQRLQHFWDNV 587
            |.        ...|.|...|          .|:|.. .|..::..::.:.|:
  Rat   523 LS--------MGKVADGSQHLTMETCNDSTLQKWLLRNYTRAEVFRNVFGNL 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant8NP_648800.1 GT2 128..427 CDD:224137 126/310 (41%)
pp-GalNAc-T 131..430 CDD:133004 126/310 (41%)
Ricin_B_lectin 446..570 CDD:279046 34/144 (24%)
RICIN 448..572 CDD:238092 34/143 (24%)
Galnt13XP_017447163.1 pp-GalNAc-T 118..418 CDD:133004 127/317 (40%)
Ricin_B_lectin 431..548 CDD:395527 33/141 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346053
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.