DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phs and Zic5

DIOPT Version :10

Sequence 1:NP_648789.3 Gene:Phs / 39697 FlyBaseID:FBgn0036522 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_001382593.1 Gene:Zic5 / 361095 RGDID:1310160 Length:623 Species:Rattus norvegicus


Alignment Length:173 Identity:55/173 - (31%)
Similarity:78/173 - (45%) Gaps:32/173 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   652 TGEKPYVCGQCGRAFRLKMRLVEH-QLRHRAEKAYKCDICSMPLATKQDLSLHMRHHKNDRRYKC 715
            :|.||     |.:.|.....||.| .:.|.........:|..     :|               |
  Rat   386 SGAKP-----CSKTFGTMHELVNHVTVEHVGGPEQSSHVCFW-----ED---------------C 425

  Fly   716 DKCNKGFVRSSDLSIHVRIHTGEKPYSCDL--CGKAFRARQNLVVHRRTHLGDKPIQCEL--CDK 776
            .:..|.|.....|..|:|:||||||:.|..  |||.|...:||.:|:|||.|:||.:||.  ||:
  Rat   426 PREGKPFKAKYKLINHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDR 490

  Fly   777 RFARKIDMRVHMRRHTGEKPYNCD--ACQRGYSSRVNLLRHQE 817
            :||...|.:.|...||.:|||.|.  .|.:.|:...:|.:|.:
  Rat   491 KFANSSDRKKHSHVHTSDKPYYCKIRGCDKSYTHPSSLRKHMK 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhsNP_648789.3 COG5048 <594..787 CDD:227381 44/139 (32%)
C2H2 Zn finger 631..651 CDD:275368
C2H2 Zn finger 715..735 CDD:275368 6/19 (32%)
C2H2 Zn finger 743..763 CDD:275368 9/21 (43%)
C2H2 Zn finger 771..791 CDD:275368 8/21 (38%)
zf-H2C2_2 783..808 CDD:463886 10/26 (38%)
C2H2 Zn finger 799..816 CDD:275370 4/18 (22%)
Zic5NP_001382593.1 zf_ZIC 361..413 CDD:436441 9/31 (29%)
COG5048 <389..551 CDD:227381 54/170 (32%)
C2H2 Zn finger 425..445 CDD:275368 6/19 (32%)
C2H2 Zn finger 453..475 CDD:275368 9/21 (43%)
C2H2 Zn finger 483..505 CDD:275368 8/21 (38%)
C2H2 Zn finger 513..535 CDD:275368 5/21 (24%)
Blue background indicates that the domain is not in the aligned region.

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