DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phs and tra-1

DIOPT Version :10

Sequence 1:NP_648789.3 Gene:Phs / 39697 FlyBaseID:FBgn0036522 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_001022880.2 Gene:tra-1 / 176548 WormBaseID:WBGene00006604 Length:1110 Species:Caenorhabditis elegans


Alignment Length:575 Identity:124/575 - (21%)
Similarity:198/575 - (34%) Gaps:166/575 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 NNVVKVQQNAKGSKKDGTQSAQKSETNPKHLENAETNSKDNTESVALKETIHDKQLTIDEAGKAG 476
            :.||:.|:....|||.......|.|.               .:..|.:....|||   ...|...
 Worm    10 DTVVEAQRRGSFSKKKNANGWNKVEL---------------VDQCAKQMGSEDKQ---PGGGDVK 56

  Fly   477 TQKDDNSNQKQLDKSEANAGKSKMVDQVHQQM--PVESAKDHQQMTEEPTNSTKRKRGRKERKSP 539
            |:.|.:.|  .|..:.:|..:|. |...||.:  |::        ...|..::..::....:..|
 Worm    57 TENDPSKN--GLGSATSNFIQSS-VPPSHQTLSNPLQ--------LSPPAEASVAQQSGASQVFP 110

  Fly   540 T--PVLIPLGDKEIKEEPELPERRMRKSRQHVDYVVEIKDEEEDDDEVEEAEVDDDSSATIS--- 599
            |  ..|....|:.::............|...:..||:..::...:.......|..:...||:   
 Worm   111 TFQAALGASSDELLQPNATSSSTSSSASTSSIVPVVKFTNQTAPNGSTVATSVGQNVRLTINGKR 175

  Fly   600 ----------PHNSSTDESFTSIKRESSEESQHNGIGGIH--TCNF--CGKTFKRFSRMQDHLRL 650
                      |.|::.:         ||.....:.:.|.|  ||.:  |..:|:....:.||:  
 Worm   176 VGRPPGTFKRPQNNAAN---------SSNSGNDSDMMGDHDLTCRWKSCNSSFQTLKALVDHV-- 229

  Fly   651 HTGEKPYVCGQCGRAFRLKMRLVEHQLRHRAEKAYKCDICSMPLATKQDLSLHMRHHKNDRRYKC 715
               ::.:|                 |...:...|::|:                       ...|
 Worm   230 ---QESHV-----------------QSTEQEHHAWRCE-----------------------WEGC 251

  Fly   716 DKCNKGFVRSSDLSIHVRIHTGEKPYSCDL--CGKAFRARQNLVVHRRTHLGDKPIQCEL--CDK 776
            |: |:.|.....|.:|||.||||||..|:.  |||.:...:||..|||||.|:||.:||.  |:|
 Worm   252 DR-NETFKALYMLIVHVRRHTGEKPNKCEYPGCGKEYSRLENLKTHRRTHTGEKPYKCEFADCEK 315

  Fly   777 RFARKIDMRVHMRR-HTGEKPYNCD--ACQRGYSSRVNLLRHQEREHGIEEQ------------- 825
            .|:...|...|..| |:..|||:|.  .|.:.|:...:|.:|.:..||.:|.             
 Worm   316 AFSNASDRAKHQNRTHSNLKPYSCQIPQCTKSYTDPSSLRKHIKAVHGDDEYEKAKKSRPANYSN 380

  Fly   826 --------VPGSGQADKKHTKTATEN-----------EQENEPKAKAAPRRPRREKLQQKIAAQE 871
                    .|.:|.  ..|...||.|           .|:|......|......::.||.:||  
 Worm   381 RRRPDHRLAPPTGA--MSHPYLATPNSGASVVAHSSVHQQNFINMALAQHHHNAQRAQQLMAA-- 441

  Fly   872 KLLNDLKRSLSAMPEIPEESAQVKLDGSGQDIPADAGAGH-AQVQVTLSMQMEPA 925
                    :.:.||.:...||..         .|.|.|.| ||.|:..:..|:.|
 Worm   442 --------TGNVMPMMDPASAAA---------AAQAQAHHQAQAQMLQTHMMQQA 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhsNP_648789.3 COG5048 <594..787 CDD:227381 52/213 (24%)
C2H2 Zn finger 631..651 CDD:275368 5/21 (24%)
C2H2 Zn finger 715..735 CDD:275368 8/19 (42%)
C2H2 Zn finger 743..763 CDD:275368 9/21 (43%)
C2H2 Zn finger 771..791 CDD:275368 8/22 (36%)
zf-H2C2_2 783..808 CDD:463886 10/27 (37%)
C2H2 Zn finger 799..816 CDD:275370 4/18 (22%)
tra-1NP_001022880.2 COG5048 <177..358 CDD:227381 60/235 (26%)
C2H2 Zn finger 246..270 CDD:275368 9/47 (19%)
SFP1 <272..362 CDD:227516 35/89 (39%)
C2H2 Zn finger 278..300 CDD:275368 9/21 (43%)
zf-H2C2_2 292..319 CDD:463886 15/26 (58%)
C2H2 Zn finger 308..331 CDD:275368 8/22 (36%)
C2H2 Zn finger 339..362 CDD:275368 5/22 (23%)

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