DRSC/TRiP Functional Genomics Resources

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Protein Alignment mrn and AT4G17020

DIOPT Version :9

Sequence 1:NP_648780.1 Gene:mrn / 39688 FlyBaseID:FBgn0261109 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001190745.1 Gene:AT4G17020 / 827410 AraportID:AT4G17020 Length:482 Species:Arabidopsis thaliana


Alignment Length:444 Identity:140/444 - (31%)
Similarity:246/444 - (55%) Gaps:23/444 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEATSCLTALNV 114
            |:||||...||.|:.|.||.:|:::::::|::|.|||..::..|.......:...|...|..|.:
plant    23 LDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLRI 87

  Fly   115 WRVTAIPGGLSAWELSPTFKKSVRQVLLGGG--KPWPMTNTLDKDSKPRDIAFLDTYAMSRWRCV 177
            :...:.....:::.|:|||:.::::.::.||  ...||.:  |...|...:..|:|||:.:|.|.
plant    88 FSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNS--DNAIKLPSLQELETYALKQWECF 150

  Fly   178 LHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQY 242
            |..::.:|  .|.....||...::|.....|.:|| :||..:|..||||||:||.||:|:.:.:|
plant   151 LLQLINSG--QGEKLTGISSSMMKIFQRGLLSQRD-KDGPRLTESGFQFLLMDTNAQLWYIIREY 212

  Fly   243 LDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYP 306
            :...|||.:...:.:|.|.:|||...|:.|:...:.......|:.|.:.||| .|:.||:..|.|
plant   213 ILNAEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIP 277

  Fly   307 TRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNL 371
            |:||.|:         ||::.:.:.:..|::|:|||:|:|||:.|.||..:|.||..:.|:.|||
plant   278 TKLATNL---------SVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNL 333

  Fly   372 VVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNR 436
            :...:|::|:..|...|||::||:::|:|.:||  |..:..    ..:|..|.|||:|||.:..|
plant   334 IACAITKESLYNAFDNGITSDQIITFLQQNSHP--RCADRV----PSIPENVTDQIRLWETDLQR 392

  Fly   437 FTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRY 490
            ...|:...|::|.|...|....|:|:....|:|::.:...:||:...|:.::.:
plant   393 IEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREF 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mrnNP_648780.1 Tfb2 39..403 CDD:281797 116/355 (33%)
AT4G17020NP_001190745.1 Tfb2 13..365 CDD:281797 116/355 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 213 1.000 Domainoid score I777
eggNOG 1 0.900 - - E1_COG5144
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7090
Inparanoid 1 1.050 247 1.000 Inparanoid score I1042
OMA 1 1.010 - - QHG54356
OrthoDB 1 1.010 - - D466731at2759
OrthoFinder 1 1.000 - - FOG0004312
OrthoInspector 1 1.000 - - oto3662
orthoMCL 1 0.900 - - OOG6_101881
Panther 1 1.100 - - LDO PTHR13152
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3583
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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